rs9380389

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0207 (6217/29946,GnomAD)
G=0201 (5864/29118,TOPMED)
G=0188 (940/5008,1000G)
G=0249 (959/3854,ALSPAC)
G=0243 (902/3708,TWINSUK)
chr6:33935299 (GRCh38.p7) (6p21.31)
AD
GWASdb2
1   publication(s)
See rs on genome
51 Enhancers around
4 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.33935299A>G
GRCh37.p13 chr 6NC_000006.11:g.33903076A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.826G=0.174
1000GenomesAmericanSub694A=0.860G=0.140
1000GenomesEast AsianSub1008A=0.836G=0.164
1000GenomesEuropeSub1006A=0.769G=0.231
1000GenomesGlobalStudy-wide5008A=0.812G=0.188
1000GenomesSouth AsianSub978A=0.780G=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.751G=0.249
The Genome Aggregation DatabaseAfricanSub8712A=0.804G=0.196
The Genome Aggregation DatabaseAmericanSub838A=0.860G=0.140
The Genome Aggregation DatabaseEast AsianSub1620A=0.863G=0.137
The Genome Aggregation DatabaseEuropeSub18474A=0.776G=0.223
The Genome Aggregation DatabaseGlobalStudy-wide29946A=0.792G=0.207
The Genome Aggregation DatabaseOtherSub302A=0.840G=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.798G=0.201
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.757G=0.243
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93803890.000813alcohol dependence21314694

eQTL of rs9380389 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9380389 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr63388212433882303E068-20773
chr63388230633882356E068-20720
chr63388238033882995E068-20081
chr63391819633918249E06815120
chr63391826533918719E06815189
chr63388304133883155E070-19921
chr63389282633892889E070-10187
chr63389301333893115E070-9961
chr63389315833893209E070-9867
chr63389367733894134E070-8942
chr63389431133894507E070-8569
chr63389475333894851E070-8225
chr63389505533895159E070-7917
chr63390319233903558E070116
chr63392568033925778E07022604
chr63392582333926273E07022747
chr63392639533926655E07023319
chr63392666133927069E07023585
chr63392785533927984E07024779
chr63392821633928401E07025140
chr63392853333928680E07025457
chr63393008033930249E07027004
chr63393028233930373E07027206
chr63393043333930533E07027357
chr63389282633892889E081-10187
chr63389301333893115E081-9961
chr63389315833893209E081-9867
chr63389367733894134E081-8942
chr63392056333920613E08117487
chr63392097333921214E08117897
chr63392503733925178E08121961
chr63392568033925778E08122604
chr63392582333926273E08122747
chr63392639533926655E08123319
chr63392666133927069E08123585
chr63392785533927984E08124779
chr63392821633928401E08125140
chr63392853333928680E08125457
chr63392876633928946E08125690
chr63395003933950261E08146963
chr63389301333893115E082-9961
chr63389315833893209E082-9867
chr63389367733894134E082-8942
chr63389431133894507E082-8569
chr63390319233903558E082116
chr63392503733925178E08221961
chr63392568033925778E08222604
chr63392582333926273E08222747
chr63392639533926655E08223319
chr63392666133927069E08223585
chr63395003933950261E08246963




Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr63394371033944003E07040634
chr63394342233943534E08240346
chr63394354833943598E08240472
chr63394371033944003E08240634