rs9387092

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0484 (14467/29878,GnomAD)
T=0464 (13528/29118,TOPMED)
C==0496 (2486/5008,1000G)
C==0467 (1799/3854,ALSPAC)
C==0461 (1708/3708,TWINSUK)
chr6:112643150 (GRCh38.p7) (6q21)
AD
GWASdb2
1   publication(s)
See rs on genome
8 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.112643150C>T
GRCh37.p13 chr 6NC_000006.11:g.112964352C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.639T=0.361
1000GenomesAmericanSub694C=0.510T=0.490
1000GenomesEast AsianSub1008C=0.502T=0.498
1000GenomesEuropeSub1006C=0.502T=0.498
1000GenomesGlobalStudy-wide5008C=0.496T=0.504
1000GenomesSouth AsianSub978C=0.280T=0.720
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.467T=0.533
The Genome Aggregation DatabaseAfricanSub8690C=0.611T=0.389
The Genome Aggregation DatabaseAmericanSub838C=0.520T=0.480
The Genome Aggregation DatabaseEast AsianSub1614C=0.522T=0.478
The Genome Aggregation DatabaseEuropeSub18434C=0.471T=0.528
The Genome Aggregation DatabaseGlobalStudy-wide29878C=0.515T=0.484
The Genome Aggregation DatabaseOtherSub302C=0.460T=0.540
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.535T=0.464
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.461T=0.539
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs93870920.000111alcohol dependence24277619

eQTL of rs9387092 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9387092 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6113012410113012925E06848058
chr6113011449113011570E07047097
chr6113012410113012925E07048058
chr6113011578113012350E07147226
chr6112972686112972884E0728334
chr6113011578113012350E07347226
chr6113011578113012350E07447226
chr6112942050112942326E081-22026