rs938979

Homo sapiens
T>C
TLN2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0331 (9899/29850,GnomAD)
T==0304 (8851/29118,TOPMED)
T==0371 (1856/5008,1000G)
T==0287 (1105/3854,ALSPAC)
T==0277 (1027/3708,TWINSUK)
chr15:62647241 (GRCh38.p7) (15q22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
80 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.62647241T>C
GRCh37.p13 chr 15NC_000015.9:g.62939440T>C
TLN2 RefSeqGeneNG_033932.1:g.4931T>C

Gene: TLN2, talin 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
TLN2 transcriptNM_015059.2:c.N/AGenic Upstream Transcript Variant
TLN2 transcript variant X2XM_005254708.4:c.N/AIntron Variant
TLN2 transcript variant X3XM_005254710.4:c.N/AIntron Variant
TLN2 transcript variant X6XM_005254711.4:c.N/AIntron Variant
TLN2 transcript variant X5XM_005254712.4:c.N/AIntron Variant
TLN2 transcript variant X8XM_005254713.4:c.N/AIntron Variant
TLN2 transcript variant X10XM_005254714.3:c.N/AIntron Variant
TLN2 transcript variant X9XM_005254715.2:c.N/AIntron Variant
TLN2 transcript variant X1XM_006720717.3:c.N/AIntron Variant
TLN2 transcript variant X4XM_017022665.1:c.N/AIntron Variant
TLN2 transcript variant X7XM_017022666.1:c.N/AIntron Variant
TLN2 transcript variant X12XM_017022667.1:c.N/AIntron Variant
TLN2 transcript variant X12XM_017022668.1:c.N/AIntron Variant
TLN2 transcript variant X14XM_017022669.1:c.N/AIntron Variant
TLN2 transcript variant X14XR_001751405.1:n.N/AIntron Variant
TLN2 transcript variant X15XR_001751406.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.312C=0.688
1000GenomesAmericanSub694T=0.350C=0.650
1000GenomesEast AsianSub1008T=0.622C=0.378
1000GenomesEuropeSub1006T=0.294C=0.706
1000GenomesGlobalStudy-wide5008T=0.371C=0.629
1000GenomesSouth AsianSub978T=0.280C=0.720
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.287C=0.713
The Genome Aggregation DatabaseAfricanSub8696T=0.316C=0.684
The Genome Aggregation DatabaseAmericanSub836T=0.380C=0.620
The Genome Aggregation DatabaseEast AsianSub1616T=0.610C=0.390
The Genome Aggregation DatabaseEuropeSub18400T=0.315C=0.685
The Genome Aggregation DatabaseGlobalStudy-wide29850T=0.331C=0.668
The Genome Aggregation DatabaseOtherSub302T=0.160C=0.840
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.304C=0.696
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.277C=0.723
PMID Title Author Journal

P-Value

SNP ID p-value Traits Study
rs9389792.26E-05alcoholismpha002893

eQTL of rs938979 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs938979 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr156291055762911290E067-28150
chr156291135662911576E067-27864
chr156291164262912288E067-27152
chr156291692862918062E067-21378
chr156289848062899107E068-40333
chr156290262362902697E068-36743
chr156290277362902997E068-36443
chr156290343862903533E068-35907
chr156290362262903675E068-35765
chr156290390162903941E068-35499
chr156291135662911576E068-27864
chr156291164262912288E068-27152
chr156292952662929717E068-9723
chr156292974162929984E068-9456
chr156293156462932051E068-7389
chr156293219462932276E068-7164
chr156293393362934182E068-5258
chr156293675962936837E068-2603
chr156293687962937020E068-2420
chr156293712062937295E068-2145
chr156293742162937893E068-1547
chr156295041962950605E06810979
chr156295071262951073E06811272
chr156291135662911576E069-27864
chr156291164262912288E069-27152
chr156291682562916869E069-22571
chr156291692862918062E069-21378
chr156291827562918388E069-21052
chr156293156462932051E069-7389
chr156293219462932276E069-7164
chr156294019462940306E069754
chr156295041962950605E06910979
chr156290262362902697E071-36743
chr156290277362902997E071-36443
chr156291164262912288E071-27152
chr156291692862918062E071-21378
chr156293156462932051E071-7389
chr156293219462932276E071-7164
chr156293712062937295E071-2145
chr156293742162937893E071-1547
chr156290277362902997E072-36443
chr156291055762911290E072-28150
chr156291135662911576E072-27864
chr156291164262912288E072-27152
chr156291682562916869E072-22571
chr156293156462932051E072-7389
chr156293393362934182E072-5258
chr156293742162937893E072-1547
chr156293949162940164E07251
chr156289567762895757E073-43683
chr156290277362902997E073-36443
chr156291055762911290E073-28150
chr156291135662911576E073-27864
chr156291164262912288E073-27152
chr156291652762916768E073-22672
chr156291682562916869E073-22571
chr156291692862918062E073-21378
chr156291827562918388E073-21052
chr156293156462932051E073-7389
chr156293219462932276E073-7164
chr156293238562932425E073-7015
chr156293248762932537E073-6903
chr156293258362932637E073-6803
chr156289848062899107E074-40333
chr156289935762899463E074-39977
chr156290262362902697E074-36743
chr156290277362902997E074-36443
chr156291135662911576E074-27864
chr156291164262912288E074-27152
chr156291652762916768E074-22672
chr156291682562916869E074-22571
chr156291692862918062E074-21378
chr156293156462932051E074-7389
chr156293393362934182E074-5258
chr156293675962936837E074-2603
chr156293687962937020E074-2420
chr156293712062937295E074-2145
chr156293742162937893E074-1547
chr156293949162940164E07451
chr156294019462940306E074754