rs9390276

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0076 (2290/29892,GnomAD)
C=0061 (1791/29118,TOPMED)
C=0092 (462/5008,1000G)
C=0084 (323/3854,ALSPAC)
C=0091 (338/3708,TWINSUK)
chr6:100331816 (GRCh38.p7) (6q16.3)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.100331816T>C
GRCh37.p13 chr 6NC_000006.11:g.100779692T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.992C=0.008
1000GenomesAmericanSub694T=0.860C=0.140
1000GenomesEast AsianSub1008T=0.805C=0.195
1000GenomesEuropeSub1006T=0.914C=0.086
1000GenomesGlobalStudy-wide5008T=0.908C=0.092
1000GenomesSouth AsianSub978T=0.930C=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.916C=0.084
The Genome Aggregation DatabaseAfricanSub8730T=0.981C=0.019
The Genome Aggregation DatabaseAmericanSub832T=0.820C=0.180
The Genome Aggregation DatabaseEast AsianSub1554T=0.738C=0.262
The Genome Aggregation DatabaseEuropeSub18474T=0.917C=0.082
The Genome Aggregation DatabaseGlobalStudy-wide29892T=0.923C=0.076
The Genome Aggregation DatabaseOtherSub302T=0.830C=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.938C=0.061
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.909C=0.091
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs93902760.000709alcohol dependence24277619

eQTL of rs9390276 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9390276 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6100730023100730180E070-49512
chr6100731283100731478E070-48214
chr6100730023100730180E081-49512