rs9395865

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0433 (12969/29918,GnomAD)
T=0430 (12547/29118,TOPMED)
C==0474 (2375/5008,1000G)
T=0303 (1168/3854,ALSPAC)
T=0285 (1057/3708,TWINSUK)
chr6:53442896 (GRCh38.p7) (6p12.1)
AD
GWASCatalog
1   publication(s)
See rs on genome
98 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.53442896C>T
GRCh37.p13 chr 6NC_000006.11:g.53307694C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.393T=0.607
1000GenomesAmericanSub694C=0.480T=0.520
1000GenomesEast AsianSub1008C=0.282T=0.718
1000GenomesEuropeSub1006C=0.659T=0.341
1000GenomesGlobalStudy-wide5008C=0.474T=0.526
1000GenomesSouth AsianSub978C=0.590T=0.410
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.697T=0.303
The Genome Aggregation DatabaseAfricanSub8702C=0.440T=0.560
The Genome Aggregation DatabaseAmericanSub836C=0.410T=0.590
The Genome Aggregation DatabaseEast AsianSub1612C=0.264T=0.736
The Genome Aggregation DatabaseEuropeSub18468C=0.656T=0.343
The Genome Aggregation DatabaseGlobalStudy-wide29918C=0.566T=0.433
The Genome Aggregation DatabaseOtherSub300C=0.770T=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.569T=0.430
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.715T=0.285
PMID Title Author Journal
22554406Family-based genome-wide association study of frontal theta oscillations identifies potassium channel gene KCNJ6.Kang SJGenes Brain Behav

P-Value

SNP ID p-value Traits Study
rs93958656E-06alcohol dependence22554406

eQTL of rs9395865 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9395865 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr65330213253302795E067-4899
chr65330296153303049E067-4645
chr65330318453303305E067-4389
chr65330496253305233E067-2461
chr65330523453305325E067-2369
chr65330590753306031E067-1663
chr65334832453348790E06740630
chr65334883753349022E06741143
chr65335182353351873E06744129
chr65335201253352153E06744318
chr65327526453275802E068-31892
chr65327698253277054E068-30640
chr65327767953277789E068-29905
chr65329730953297422E068-10272
chr65329744053298086E068-9608
chr65330177353301966E068-5728
chr65330213253302795E068-4899
chr65330296153303049E068-4645
chr65330318453303305E068-4389
chr65330496253305233E068-2461
chr65330523453305325E068-2369
chr65330590753306031E068-1663
chr65330608553306247E068-1447
chr65334765153347722E06839957
chr65334785553347952E06840161
chr65334832453348790E06840630
chr65334979453349865E06842100
chr65334987853349932E06842184
chr65330177353301966E069-5728
chr65330213253302795E069-4899
chr65330296153303049E069-4645
chr65330318453303305E069-4389
chr65330496253305233E069-2461
chr65330523453305325E069-2369
chr65330590753306031E069-1663
chr65330608553306247E069-1447
chr65334765153347722E06939957
chr65334785553347952E06940161
chr65334832453348790E06940630
chr65334979453349865E06942100
chr65334987853349932E06942184
chr65335172353351793E06944029
chr65335182353351873E06944129
chr65335201253352153E06944318
chr65330177353301966E071-5728
chr65330213253302795E071-4899
chr65330296153303049E071-4645
chr65330318453303305E071-4389
chr65330496253305233E071-2461
chr65330523453305325E071-2369
chr65330590753306031E071-1663
chr65330608553306247E071-1447
chr65332680353326974E07119109
chr65332726953327361E07119575
chr65335172353351793E07144029
chr65335182353351873E07144129
chr65329653153296601E072-11093
chr65329669353296849E072-10845
chr65330177353301966E072-5728
chr65330213253302795E072-4899
chr65330296153303049E072-4645
chr65330318453303305E072-4389
chr65330496253305233E072-2461
chr65330523453305325E072-2369
chr65330590753306031E072-1663
chr65334832453348790E07240630
chr65334883753349022E07241143
chr65334979453349865E07242100
chr65334987853349932E07242184
chr65335182353351873E07244129
chr65335201253352153E07244318
chr65330177353301966E073-5728
chr65330213253302795E073-4899
chr65330296153303049E073-4645
chr65330318453303305E073-4389
chr65330496253305233E073-2461
chr65330523453305325E073-2369
chr65330590753306031E073-1663
chr65330608553306247E073-1447
chr65334883753349022E07341143
chr65327526453275802E074-31892
chr65330177353301966E074-5728
chr65330213253302795E074-4899
chr65330296153303049E074-4645
chr65330318453303305E074-4389
chr65330496253305233E074-2461
chr65330523453305325E074-2369
chr65330590753306031E074-1663
chr65330608553306247E074-1447
chr65332661953326760E07418925
chr65332680353326974E07419109
chr65334785553347952E07440161
chr65334832453348790E07440630
chr65334979453349865E07442100
chr65334987853349932E07442184
chr65335172353351793E07444029
chr65335182353351873E07444129
chr65335201253352153E07444318