rs9397906

Homo sapiens
G>A
LOC101928923 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0161 (4838/29918,GnomAD)
A=0162 (4737/29118,TOPMED)
A=0212 (1062/5008,1000G)
A=0099 (380/3854,ALSPAC)
A=0096 (357/3708,TWINSUK)
chr6:156171540 (GRCh38.p7) (6q25.3)
AD
GWASdb2
2   publication(s)
See rs on genome
22 Enhancers around
3 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.156171540G>A
GRCh37.p13 chr 6NC_000006.11:g.156492674G>A

Gene: LOC101928923, uncharacterized LOC101928923(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101928923 transcriptXR_001744423.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.757A=0.243
1000GenomesAmericanSub694G=0.900A=0.100
1000GenomesEast AsianSub1008G=0.689A=0.311
1000GenomesEuropeSub1006G=0.870A=0.130
1000GenomesGlobalStudy-wide5008G=0.788A=0.212
1000GenomesSouth AsianSub978G=0.770A=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.901A=0.099
The Genome Aggregation DatabaseAfricanSub8716G=0.793A=0.207
The Genome Aggregation DatabaseAmericanSub832G=0.880A=0.120
The Genome Aggregation DatabaseEast AsianSub1612G=0.714A=0.286
The Genome Aggregation DatabaseEuropeSub18458G=0.867A=0.133
The Genome Aggregation DatabaseGlobalStudy-wide29918G=0.838A=0.161
The Genome Aggregation DatabaseOtherSub300G=0.920A=0.080
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.837A=0.162
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.904A=0.096
PMID Title Author Journal
26909693Creative Activities in Music--A Genome-Wide Linkage Analysis.Oikkonen JPLoS One
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs93979060.000968alcohol dependence24277619

eQTL of rs9397906 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9397906 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6156497106156497571E0684432
chr6156446823156448120E070-44554
chr6156468124156468215E070-24459
chr6156468262156468312E070-24362
chr6156497106156497571E0714432
chr6156445980156446042E081-46632
chr6156446079156446156E081-46518
chr6156446671156446786E081-45888
chr6156446823156448120E081-44554
chr6156448221156448290E081-44384
chr6156497106156497571E0814432
chr6156497606156497820E0814932
chr6156497898156497997E0815224
chr6156446671156446786E082-45888
chr6156446823156448120E082-44554
chr6156448221156448290E082-44384
chr6156468124156468215E082-24459
chr6156468262156468312E082-24362
chr6156468493156468841E082-23833
chr6156468878156469071E082-23603
chr6156485759156485861E082-6813
chr6156485940156486139E082-6535





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr6156488269156489377E069-3297
chr6156488269156489377E071-3297
chr6156488269156489377E073-3297