rs9410906

Homo sapiens
C>T
NAA35 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0022 (674/29952,GnomAD)
T=0014 (424/29118,TOPMED)
T=0011 (55/5008,1000G)
T=0026 (102/3854,ALSPAC)
T=0025 (94/3708,TWINSUK)
chr9:86015871 (GRCh38.p7) (9q21.33)
AD
GWASdb2
1   publication(s)
See rs on genome
37 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.86015871C>T
GRCh37.p13 chr 9NC_000009.11:g.88630786C>T

Gene: NAA35, N(alpha)-acetyltransferase 35, NatC auxiliary subunit(plus strand)

Molecule type Change Amino acid[Codon] SO Term
NAA35 transcript variant 2NM_001321881.1:c.N/AIntron Variant
NAA35 transcript variant 3NM_001321882.1:c.N/AIntron Variant
NAA35 transcript variant 1NM_024635.3:c.N/AIntron Variant
NAA35 transcript variant X1XM_005252127.3:c.N/AIntron Variant
NAA35 transcript variant X3XM_011518903.2:c.N/AIntron Variant
NAA35 transcript variant X4XM_011518904.2:c.N/AIntron Variant
NAA35 transcript variant X2XM_017015012.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.999T=0.001
1000GenomesAmericanSub694C=0.990T=0.010
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=0.965T=0.035
1000GenomesGlobalStudy-wide5008C=0.989T=0.011
1000GenomesSouth AsianSub978C=0.990T=0.010
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.974T=0.026
The Genome Aggregation DatabaseAfricanSub8724C=0.995T=0.005
The Genome Aggregation DatabaseAmericanSub834C=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1620C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18472C=0.966T=0.033
The Genome Aggregation DatabaseGlobalStudy-wide29952C=0.977T=0.022
The Genome Aggregation DatabaseOtherSub302C=0.980T=0.020
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.985T=0.014
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.975T=0.025
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs94109062.71E-05alcohol consumption23953852

eQTL of rs9410906 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9410906 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr98864746888647543E06716682
chr98864768988647769E06716903
chr98863762488637959E0686838
chr98863798388638152E0687197
chr98866201188662177E06831225
chr98858412088584171E069-46615
chr98863762488637959E0696838
chr98863798388638152E0697197
chr98859662288596706E070-34080
chr98859676688597209E070-33577
chr98867783488678737E07047048
chr98867924188679424E07048455
chr98867945088679490E07048664
chr98867957688679651E07048790
chr98858412088584171E071-46615
chr98859352088593735E071-37051
chr98866168988661982E07130903
chr98866201188662177E07131225
chr98858412088584171E072-46615
chr98863762488637959E0726838
chr98863798388638152E0727197
chr98863834688638425E0727560
chr98865052588650575E07219739
chr98858277188582959E074-47827
chr98858307688583126E074-47660
chr98858312888583178E074-47608
chr98859318588593242E074-37544
chr98863603488636503E0745248
chr98863798388638152E0747197
chr98866168988661982E07430903
chr98866201188662177E07431225
chr98867924188679424E08148455
chr98867945088679490E08148664
chr98867924188679424E08248455
chr98867945088679490E08248664
chr98867957688679651E08248790
chr98867991688679988E08249130