SNP Detail Info-rs9416282

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0334 (9989/29860,GnomAD)
G=0313 (9113/29116,TOPMED)
G=0208 (1044/5008,1000G)
G=0429 (1655/3854,ALSPAC)
G=0438 (1623/3708,TWINSUK)

Position: chr10:53618908 (GRCh38.p7) (10q21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 10	NC_000010.11:g.53618908A>G
GRCh37.p13 chr 10	NC_000010.10:g.55378668A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.831	G=0.169
1000Genomes	American	Sub	694	A=0.660	G=0.340
1000Genomes	East Asian	Sub	1008	A=0.980	G=0.020
1000Genomes	Europe	Sub	1006	A=0.588	G=0.412
1000Genomes	Global	Study-wide	5008	A=0.792	G=0.208
1000Genomes	South Asian	Sub	978	A=0.850	G=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.571	G=0.429
The Genome Aggregation Database	African	Sub	8690	A=0.788	G=0.212
The Genome Aggregation Database	American	Sub	832	A=0.690	G=0.310
The Genome Aggregation Database	East Asian	Sub	1614	A=0.994	G=0.006
The Genome Aggregation Database	Europe	Sub	18422	A=0.578	G=0.421
The Genome Aggregation Database	Global	Study-wide	29860	A=0.665	G=0.334
The Genome Aggregation Database	Other	Sub	302	A=0.610	G=0.390
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.687	G=0.313
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.562	G=0.438

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9416282	0.000941	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9416282