rs9416285

Homo sapiens
C>A / C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0347 (10382/29844,GnomAD)
T=0320 (9334/29116,TOPMED)
T=0241 (1206/5008,1000G)
T=0439 (1691/3854,ALSPAC)
T=0455 (1686/3708,TWINSUK)
chr10:53621431 (GRCh38.p7) (10q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
143 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.53621431C>A
GRCh38.p7 chr 10NC_000010.11:g.53621431C>T
GRCh37.p13 chr 10NC_000010.10:g.55381191C>A
GRCh37.p13 chr 10NC_000010.10:g.55381191C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.832T=0.168
1000GenomesAmericanSub694C=0.640T=0.360
1000GenomesEast AsianSub1008C=0.933T=0.067
1000GenomesEuropeSub1006C=0.576T=0.424
1000GenomesGlobalStudy-wide5008C=0.759T=0.241
1000GenomesSouth AsianSub978C=0.750T=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.561T=0.439
The Genome Aggregation DatabaseAfricanSub8674C=0.783A=0.000
The Genome Aggregation DatabaseAmericanSub834C=0.650A=0.00,
The Genome Aggregation DatabaseEast AsianSub1612C=0.948A=0.000
The Genome Aggregation DatabaseEuropeSub18422C=0.566A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29844C=0.652A=0.000
The Genome Aggregation DatabaseOtherSub302C=0.540A=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29116C=0.679T=0.320
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.545T=0.455
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs94162850.000419alcohol dependence20201924

eQTL of rs9416285 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9416285 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10132864031132864237E067-18760
chr10132864262132864645E067-18352
chr10132907657132907707E06724660
chr10132907793132907864E06724796
chr10132907940132908228E06724943
chr10132908384132908480E06725387
chr10132929388132929632E06746391
chr10132929676132930986E06746679
chr10132930998132931193E06748001
chr10132924304132924558E06841307
chr10132924589132925010E06841592
chr10132925117132925845E06842120
chr10132907395132907480E06924398
chr10132907544132907598E06924547
chr10132907657132907707E06924660
chr10132907793132907864E06924796
chr10132841454132841601E070-41396
chr10132841636132841747E070-41250
chr10132841789132841877E070-41120
chr10132846612132846666E070-36331
chr10132846793132847131E070-35866
chr10132847195132847343E070-35654
chr10132847369132847702E070-35295
chr10132891315132891394E0708318
chr10132891818132891869E0708821
chr10132891949132892004E0708952
chr10132892309132892544E0709312
chr10132892593132892732E0709596
chr10132892787132893426E0709790
chr10132893747132893851E07010750
chr10132896754132896848E07013757
chr10132896895132896945E07013898
chr10132897058132897120E07014061
chr10132897154132897543E07014157
chr10132897587132897658E07014590
chr10132897749132897813E07014752
chr10132897853132898000E07014856
chr10132899078132899142E07016081
chr10132899279132899415E07016282
chr10132899712132899805E07016715
chr10132900594132900753E07017597
chr10132900760132900814E07017763
chr10132901031132901381E07018034
chr10132901588132901649E07018591
chr10132915028132915108E07032031
chr10132917031132917147E07034034
chr10132917337132917476E07034340
chr10132864031132864237E072-18760
chr10132864262132864645E072-18352
chr10132907657132907707E07224660
chr10132907793132907864E07224796
chr10132907940132908228E07224943
chr10132864031132864237E073-18760
chr10132864262132864645E073-18352
chr10132907395132907480E07324398
chr10132907544132907598E07324547
chr10132907657132907707E07324660
chr10132907793132907864E07324796
chr10132907940132908228E07324943
chr10132908384132908480E07325387
chr10132924304132924558E07341307
chr10132924589132925010E07341592
chr10132907657132907707E07424660
chr10132907793132907864E07424796
chr10132907940132908228E07424943
chr10132838713132838757E081-44240
chr10132842621132842723E081-40274
chr10132842993132843043E081-39954
chr10132843132132843248E081-39749
chr10132843446132843534E081-39463
chr10132843678132843734E081-39263
chr10132844352132844451E081-38546
chr10132844538132844619E081-38378
chr10132846612132846666E081-36331
chr10132846793132847131E081-35866
chr10132847369132847702E081-35295
chr10132876091132876156E081-6841
chr10132879241132879295E081-3702
chr10132892787132893426E0819790
chr10132893747132893851E08110750
chr10132894303132894401E08111306
chr10132896754132896848E08113757
chr10132896895132896945E08113898
chr10132897058132897120E08114061
chr10132897154132897543E08114157
chr10132897587132897658E08114590
chr10132897749132897813E08114752
chr10132897853132898000E08114856
chr10132898748132898976E08115751
chr10132899078132899142E08116081
chr10132899279132899415E08116282
chr10132899712132899805E08116715
chr10132900594132900753E08117597
chr10132900760132900814E08117763
chr10132901031132901381E08118034
chr10132901588132901649E08118591
chr10132907395132907480E08124398
chr10132907544132907598E08124547
chr10132907657132907707E08124660
chr10132907793132907864E08124796
chr10132907940132908228E08124943
chr10132908384132908480E08125387
chr10132914000132914072E08131003
chr10132914203132914345E08131206
chr10132915028132915108E08132031
chr10132915199132915514E08132202
chr10132918046132918161E08135049
chr10132918384132918495E08135387
chr10132923611132923860E08140614
chr10132924304132924558E08141307
chr10132924589132925010E08141592
chr10132925117132925845E08142120
chr10132929676132930986E08146679
chr10132930998132931193E08148001
chr10132843132132843248E082-39749
chr10132846793132847131E082-35866
chr10132847195132847343E082-35654
chr10132847369132847702E082-35295
chr10132897154132897543E08214157
chr10132897587132897658E08214590
chr10132897749132897813E08214752
chr10132897853132898000E08214856
chr10132899279132899415E08216282
chr10132899712132899805E08216715
chr10132900594132900753E08217597
chr10132900760132900814E08217763
chr10132901031132901381E08218034
chr10132901588132901649E08218591
chr10132907657132907707E08224660
chr10132907793132907864E08224796
chr10132907940132908228E08224943
chr10132908384132908480E08225387
chr10132915028132915108E08232031
chr10132915199132915514E08232202
chr10132917783132917930E08234786
chr10132918046132918161E08235049
chr10132918384132918495E08235387
chr10132918674132918727E08235677
chr10132918744132918807E08235747
chr10132918982132919132E08235985
chr10132923611132923860E08240614
chr10132924304132924558E08241307
chr10132924589132925010E08241592