rs9416295

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0292 (8750/29912,GnomAD)
C=0175 (877/5008,1000G)
C=0407 (1568/3854,ALSPAC)
C=0418 (1551/3708,TWINSUK)
chr10:53653356 (GRCh38.p7) (10q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.53653356T>C
GRCh37.p13 chr 10NC_000010.10:g.55413116T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.952C=0.048
1000GenomesAmericanSub694T=0.670C=0.330
1000GenomesEast AsianSub1008T=0.984C=0.016
1000GenomesEuropeSub1006T=0.606C=0.394
1000GenomesGlobalStudy-wide5008T=0.825C=0.175
1000GenomesSouth AsianSub978T=0.820C=0.180
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.593C=0.407
The Genome Aggregation DatabaseAfricanSub8714T=0.893C=0.107
The Genome Aggregation DatabaseAmericanSub834T=0.700C=0.300
The Genome Aggregation DatabaseEast AsianSub1614T=0.995C=0.005
The Genome Aggregation DatabaseEuropeSub18448T=0.596C=0.403
The Genome Aggregation DatabaseGlobalStudy-wide29912T=0.707C=0.292
The Genome Aggregation DatabaseOtherSub302T=0.590C=0.410
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.582C=0.418
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs94162950.0000993alcoholismpha002891
rs94162950.0000993alcohol dependence20201924

eQTL of rs9416295 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9416295 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr105544216055442232E08129044
chr105544231455442439E08129198
chr105544248255442976E08129366
chr105544300155443067E08129885