rs9423407

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0408 (12227/29914,GnomAD)
T=0401 (11698/29118,TOPMED)
T=0424 (2125/5008,1000G)
T=0422 (1625/3854,ALSPAC)
T=0425 (1576/3708,TWINSUK)
chr10:5313749 (GRCh38.p7) (10p15.1)
AD
GWASdb2
1   publication(s)
See rs on genome
125 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.5313749C>T
GRCh37.p13 chr 10 fix patch HG871_PATCHNW_003871071.1:g.343415C>T
GRCh37.p13 chr 10NC_000010.10:g.5355712C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.630T=0.370
1000GenomesAmericanSub694C=0.720T=0.280
1000GenomesEast AsianSub1008C=0.505T=0.495
1000GenomesEuropeSub1006C=0.557T=0.443
1000GenomesGlobalStudy-wide5008C=0.576T=0.424
1000GenomesSouth AsianSub978C=0.490T=0.510
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.578T=0.422
The Genome Aggregation DatabaseAfricanSub8704C=0.629T=0.371
The Genome Aggregation DatabaseAmericanSub838C=0.740T=0.260
The Genome Aggregation DatabaseEast AsianSub1614C=0.494T=0.506
The Genome Aggregation DatabaseEuropeSub18456C=0.576T=0.423
The Genome Aggregation DatabaseGlobalStudy-wide29914C=0.591T=0.408
The Genome Aggregation DatabaseOtherSub302C=0.520T=0.480
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.598T=0.401
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.575T=0.425
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs94234070.0009alcohol dependence20201924

eQTL of rs9423407 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9423407 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10321004321089E067-22326
chr10338932338982E067-4433
chr10339171339221E067-4194
chr10339288339338E067-4077
chr10339542339638E067-3777
chr10340144340306E067-3109
chr10343106343831E0670
chr10343924344003E067509
chr10344049344318E067634
chr10375058376089E06731643
chr10376620376709E06733205
chr10377023377136E06733608
chr10377181377227E06733766
chr10377277377342E06733862
chr10377563377619E06734148
chr10384197384356E06740782
chr10384424384739E06741009
chr10384830385116E06741415
chr10338932338982E068-4433
chr10339171339221E068-4194
chr10339288339338E068-4077
chr10339542339638E068-3777
chr10340144340306E068-3109
chr10343106343831E0680
chr10343924344003E068509
chr10344049344318E068634
chr10344403344453E068988
chr10344740344858E0681325
chr10377563377619E06834148
chr10377951378023E06834536
chr10378389378446E06834974
chr10384424384739E06841009
chr10384830385116E06841415
chr10321004321089E069-22326
chr10338932338982E069-4433
chr10339171339221E069-4194
chr10339288339338E069-4077
chr10339542339638E069-3777
chr10340144340306E069-3109
chr10343106343831E0690
chr10343924344003E069509
chr10344049344318E069634
chr10377563377619E06934148
chr10377951378023E06934536
chr10378389378446E06934974
chr10384424384739E06941009
chr10384830385116E06941415
chr10321004321089E070-22326
chr10321004321089E071-22326
chr10335847336053E071-7362
chr10336089336191E071-7224
chr10336373336438E071-6977
chr10336950336990E071-6425
chr10338932338982E071-4433
chr10339171339221E071-4194
chr10339288339338E071-4077
chr10339542339638E071-3777
chr10340144340306E071-3109
chr10343106343831E0710
chr10343924344003E071509
chr10344049344318E071634
chr10344403344453E071988
chr10375058376089E07131643
chr10376620376709E07133205
chr10377023377136E07133608
chr10377181377227E07133766
chr10377277377342E07133862
chr10377563377619E07134148
chr10377951378023E07134536
chr10384830385116E07141415
chr10385318385387E07141903
chr10321004321089E072-22326
chr10328668328794E072-14621
chr10338932338982E072-4433
chr10339171339221E072-4194
chr10339288339338E072-4077
chr10339542339638E072-3777
chr10340144340306E072-3109
chr10343106343831E0720
chr10343924344003E072509
chr10344049344318E072634
chr10344403344453E072988
chr10375058376089E07231643
chr10377563377619E07234148
chr10384424384739E07241009
chr10384830385116E07241415
chr10385318385387E07241903
chr10385456385601E07242041
chr10339542339638E073-3777
chr10340144340306E073-3109
chr10343106343831E0730
chr10377563377619E07334148
chr10384424384739E07341009
chr10384830385116E07341415
chr10385318385387E07341903
chr10317286317666E074-25749
chr10321004321089E074-22326
chr10335847336053E074-7362
chr10336089336191E074-7224
chr10336373336438E074-6977
chr10338932338982E074-4433
chr10339171339221E074-4194
chr10339288339338E074-4077
chr10339542339638E074-3777
chr10340144340306E074-3109
chr10343106343831E0740
chr10343924344003E074509
chr10344049344318E074634
chr10344403344453E074988
chr10344740344858E0741325
chr10375058376089E07431643
chr10376620376709E07433205
chr10377023377136E07433608
chr10377181377227E07433766
chr10377277377342E07433862
chr10377563377619E07434148
chr10377951378023E07434536
chr10384424384739E07441009
chr10384830385116E07441415
chr10352079352249E0828664
chr10352252352502E0828837
chr10352608353131E0829193
chr10356266356354E08212851
chr10356392356451E08212977
chr10356518356595E08213103