SNP Detail Info-rs9424490

Organism: Homo sapiens

Alleles: C>G

Gene : Feature

LOC101927711 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0152 (4531/29762,GnomAD)
G=0206 (6015/29116,TOPMED)
G=0181 (905/5008,1000G)
G=0044 (170/3854,ALSPAC)
G=0045 (168/3708,TWINSUK)

Position: chr1:232886124 (GRCh38.p7) (1q42.2)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.232886124C>G
GRCh37.p13 chr 1	NC_000001.10:g.233021870C>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC101927711 transcript variant X1	XR_247101.4:n.	N/A	Intron Variant
LOC101927711 transcript variant X2	XR_949278.2:n.	N/A	Intron Variant
LOC101927711 transcript variant X3	XR_949279.2:n.	N/A	Intron Variant
LOC101927711 transcript variant X4	XR_949280.2:n.	N/A	Intron Variant
LOC101927711 transcript variant X5	XR_949281.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.551	G=0.449
1000Genomes	American	Sub	694	C=0.800	G=0.200
1000Genomes	East Asian	Sub	1008	C=0.923	G=0.077
1000Genomes	Europe	Sub	1006	C=0.956	G=0.044
1000Genomes	Global	Study-wide	5008	C=0.819	G=0.181
1000Genomes	South Asian	Sub	978	C=0.950	G=0.050
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.956	G=0.044
The Genome Aggregation Database	African	Sub	8650	C=0.624	G=0.376
The Genome Aggregation Database	American	Sub	838	C=0.820	G=0.180
The Genome Aggregation Database	East Asian	Sub	1620	C=0.903	G=0.097
The Genome Aggregation Database	Europe	Sub	18352	C=0.947	G=0.052
The Genome Aggregation Database	Global	Study-wide	29762	C=0.847	G=0.152
The Genome Aggregation Database	Other	Sub	302	C=0.980	G=0.020
Trans-Omics for Precision Medicine	Global	Study-wide	29116	C=0.793	G=0.206
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.955	G=0.045

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs9424490	3.62E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9424490