rs942950

Homo sapiens
T>A / T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0347 (10378/29896,GnomAD)
T==0367 (1837/5008,1000G)
T==0238 (917/3854,ALSPAC)
T==0217 (804/3708,TWINSUK)
chr10:130017410 (GRCh38.p7) (10q26.3)
AD
GWASdb2
1   publication(s)
See rs on genome
45 Enhancers around
3 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.130017410T>A
GRCh38.p7 chr 10NC_000010.11:g.130017410T>C
GRCh37.p13 chr 10NC_000010.10:g.131815674T>A
GRCh37.p13 chr 10NC_000010.10:g.131815674T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.787C=0.213
1000GenomesAmericanSub694T=0.300C=0.700
1000GenomesEast AsianSub1008T=0.175C=0.825
1000GenomesEuropeSub1006T=0.231C=0.769
1000GenomesGlobalStudy-wide5008T=0.367C=0.633
1000GenomesSouth AsianSub978T=0.190C=0.810
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.238C=0.762
The Genome Aggregation DatabaseAfricanSub8684T=0.719A=0.000
The Genome Aggregation DatabaseAmericanSub838T=0.210A=0.00,
The Genome Aggregation DatabaseEast AsianSub1618T=0.156A=0.000
The Genome Aggregation DatabaseEuropeSub18454T=0.197A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29896T=0.347A=0.000
The Genome Aggregation DatabaseOtherSub302T=0.190A=0.00,
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.217C=0.783
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs9429500.000596alcohol dependence21314694

eQTL of rs942950 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs942950 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10117712736117712995E070-46456
chr10117713003117713071E070-46380
chr10117713380117713434E070-46017
chr10117804868117805156E07045417
chr10117805263117805599E07045812
chr10117805651117805727E07046200
chr10117805778117805828E07046327
chr10117805849117805965E07046398
chr10117806144117806224E07046693
chr10117806742117806806E07047291
chr10117806891117806974E07047440
chr10117807367117807439E07047916
chr10117807570117807660E07048119
chr10117759963117761172E071512
chr10117759963117761172E072512
chr10117733900117734011E081-25440
chr10117734037117734186E081-25265
chr10117734232117734781E081-24670
chr10117734837117734887E081-24564
chr10117734922117735415E081-24036
chr10117803190117803240E08143739
chr10117803377117803787E08143926
chr10117803983117804175E08144532
chr10117804181117804278E08144730
chr10117804285117804815E08144834
chr10117804868117805156E08145417
chr10117805263117805599E08145812
chr10117805651117805727E08146200
chr10117805778117805828E08146327
chr10117805849117805965E08146398
chr10117728138117728230E082-31221
chr10117728295117728345E082-31106
chr10117728749117728799E082-30652
chr10117729076117729587E082-29864
chr10117803377117803787E08243926
chr10117804181117804278E08244730
chr10117804285117804815E08244834
chr10117804868117805156E08245417
chr10117805263117805599E08245812
chr10117805651117805727E08246200
chr10117805778117805828E08246327
chr10117805849117805965E08246398
chr10117806144117806224E08246693
chr10117806742117806806E08247291
chr10117806891117806974E08247440





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr10117740600117740992E068-18459
chr10117740600117740992E069-18459
chr10117740600117740992E071-18459