rs9442829

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0163 (4890/29970,GnomAD)
G=0133 (3876/29118,TOPMED)
G=0100 (500/5008,1000G)
G=0170 (657/3854,ALSPAC)
G=0178 (661/3708,TWINSUK)
chr6:72615796 (GRCh38.p7) (6q13)
CD
GWASdb2
1   publication(s)
See rs on genome
8 Enhancers around
23 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.72615796A>G
GRCh37.p13 chr 6NC_000006.11:g.73325524A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.866G=0.134
1000GenomesAmericanSub694A=0.920G=0.080
1000GenomesEast AsianSub1008A=0.973G=0.027
1000GenomesEuropeSub1006A=0.835G=0.165
1000GenomesGlobalStudy-wide5008A=0.900G=0.100
1000GenomesSouth AsianSub978A=0.920G=0.080
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.830G=0.170
The Genome Aggregation DatabaseAfricanSub8716A=0.865G=0.135
The Genome Aggregation DatabaseAmericanSub836A=0.920G=0.080
The Genome Aggregation DatabaseEast AsianSub1622A=0.967G=0.033
The Genome Aggregation DatabaseEuropeSub18494A=0.807G=0.192
The Genome Aggregation DatabaseGlobalStudy-wide29970A=0.836G=0.163
The Genome Aggregation DatabaseOtherSub302A=0.870G=0.130
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.866G=0.133
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.822G=0.178
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs94428290.0000861cocaine dependence,AA23958962
rs94428290.000403cocaine dependence23958962

eQTL of rs9442829 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9442829 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr67336066873360718E07235144
chr67329892673299103E081-26421
chr67329927373299368E081-26156
chr67330022673300276E081-25248
chr67332920173329254E0813677
chr67332929673329386E0813772
chr67335892973359221E08133405
chr67329927373299368E082-26156



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr67333051073330726E0674986
chr67333076273333298E0675238
chr67333331073333548E0677786
chr67333051073330726E0684986
chr67333076273333298E0685238
chr67333331073333548E0687786
chr67333051073330726E0694986
chr67333076273333298E0695238
chr67333331073333548E0697786
chr67333051073330726E0714986
chr67333076273333298E0715238
chr67333331073333548E0717786
chr67333051073330726E0724986
chr67333076273333298E0725238
chr67333331073333548E0727786
chr67333051073330726E0734986
chr67333076273333298E0735238
chr67333331073333548E0737786
chr67333051073330726E0744986
chr67333076273333298E0745238
chr67333331073333548E0817786
chr67333076273333298E0825238
chr67333331073333548E0827786