rs9443958

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0153 (4597/29954,GnomAD)
T=0167 (4876/29118,TOPMED)
T=0104 (522/5008,1000G)
T=0157 (605/3854,ALSPAC)
T=0171 (634/3708,TWINSUK)
chr6:82119121 (GRCh38.p7) (6q14.1)
AD
GWASdb2
1   publication(s)
See rs on genome
12 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.82119121C>T
GRCh37.p13 chr 6NC_000006.11:g.82828838C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.807T=0.193
1000GenomesAmericanSub694C=0.900T=0.100
1000GenomesEast AsianSub1008C=0.998T=0.002
1000GenomesEuropeSub1006C=0.855T=0.145
1000GenomesGlobalStudy-wide5008C=0.896T=0.104
1000GenomesSouth AsianSub978C=0.950T=0.050
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.843T=0.157
The Genome Aggregation DatabaseAfricanSub8720C=0.809T=0.191
The Genome Aggregation DatabaseAmericanSub838C=0.920T=0.080
The Genome Aggregation DatabaseEast AsianSub1618C=0.998T=0.002
The Genome Aggregation DatabaseEuropeSub18476C=0.847T=0.152
The Genome Aggregation DatabaseGlobalStudy-wide29954C=0.846T=0.153
The Genome Aggregation DatabaseOtherSub302C=0.860T=0.140
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.832T=0.167
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.829T=0.171
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs94439580.000977alcohol dependence21314694

eQTL of rs9443958 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9443958 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr68285369482855110E06724856
chr68279391682794864E068-33974
chr68279919982799390E069-29448
chr68285369482855110E06924856
chr68279391682794864E071-33974
chr68279391682794864E072-33974
chr68285369482855110E07224856
chr68285517282855289E07226334
chr68285537582855463E07226537
chr68279391682794864E074-33974
chr68279919982799390E074-29448
chr68285369482855110E07424856