rs9450148

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0038 (1129/29118,TOPMED)
G=0021 (107/5008,1000G)
G=0019 (72/3854,ALSPAC)
G=0017 (62/3708,TWINSUK)
chr6:85091002 (GRCh38.p7) (6q14.3)
AD
GWASdb2
1   publication(s)
See rs on genome
19 Enhancers around
12 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.85091002A>G
GRCh37.p13 chr 6NC_000006.11:g.85800720A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.942G=0.058
1000GenomesAmericanSub694A=0.990G=0.010
1000GenomesEast AsianSub1008A=0.999G=0.001
1000GenomesEuropeSub1006A=0.990G=0.010
1000GenomesGlobalStudy-wide5008A=0.979G=0.021
1000GenomesSouth AsianSub978A=0.990G=0.010
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.981G=0.019
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.961G=0.038
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.983G=0.017
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs94501480.00018alcohol dependence20201924

eQTL of rs9450148 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9450148 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr68582000985820075E07019289
chr68582060585820683E07019885
chr68582082085820940E07020100
chr68582158685821666E07020866
chr68582199685822078E07021276
chr68578677985787103E071-13617
chr68578677985787103E074-13617
chr68578718285787269E074-13451
chr68575397285754110E081-46610
chr68575414485754656E081-46064
chr68581701685817276E08116296
chr68581752985817620E08116809
chr68581788285817946E08117162
chr68582060585820683E08119885
chr68582082085820940E08120100
chr68582158685821666E08120866
chr68582060585820683E08219885
chr68582082085820940E08220100
chr68582342285823632E08222702





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr68582380185824292E06823081
chr68582437185824518E06823651
chr68582380185824292E06923081
chr68582437185824518E06923651
chr68582380185824292E07023081
chr68582437185824518E07023651
chr68582380185824292E07123081
chr68582437185824518E07123651
chr68582380185824292E08123081
chr68582437185824518E08123651
chr68582380185824292E08223081
chr68582437185824518E08223651