SNP Detail Info-rs947386

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0283 (8467/29922,GnomAD)
T=0292 (8515/29118,TOPMED)
T=0410 (2051/5008,1000G)
T=0219 (843/3854,ALSPAC)
T=0217 (804/3708,TWINSUK)

Position: chr1:94651601 (GRCh38.p7) (1p21.3)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.94651601C>T
GRCh37.p13 chr 1	NC_000001.10:g.95117157C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.580	T=0.420
1000Genomes	American	Sub	694	C=0.590	T=0.410
1000Genomes	East Asian	Sub	1008	C=0.341	T=0.659
1000Genomes	Europe	Sub	1006	C=0.804	T=0.196
1000Genomes	Global	Study-wide	5008	C=0.590	T=0.410
1000Genomes	South Asian	Sub	978	C=0.640	T=0.360
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.781	T=0.219
The Genome Aggregation Database	African	Sub	8706	C=0.625	T=0.375
The Genome Aggregation Database	American	Sub	834	C=0.580	T=0.420
The Genome Aggregation Database	East Asian	Sub	1612	C=0.369	T=0.631
The Genome Aggregation Database	Europe	Sub	18468	C=0.796	T=0.204
The Genome Aggregation Database	Global	Study-wide	29922	C=0.717	T=0.283
The Genome Aggregation Database	Other	Sub	302	C=0.780	T=0.220
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.707	T=0.292
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.783	T=0.217

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs947386	5.68E-05	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs947386