rs9508066

Homo sapiens
G>A
LOC105370135 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0314 (9403/29856,GnomAD)
A=0293 (8544/29116,TOPMED)
A=0267 (1336/5008,1000G)
A=0304 (1173/3854,ALSPAC)
A=0289 (1072/3708,TWINSUK)
chr13:28578368 (GRCh38.p7) (13q12.3)
AD
GWASdb2
1   publication(s)
See rs on genome
44 Enhancers around
7 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.28578368G>A
GRCh37.p13 chr 13NC_000013.10:g.29152505G>A

Gene: LOC105370135, uncharacterized LOC105370135(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105370135 transcriptXR_941799.2:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.694A=0.306
1000GenomesAmericanSub694G=0.850A=0.150
1000GenomesEast AsianSub1008G=0.709A=0.291
1000GenomesEuropeSub1006G=0.716A=0.284
1000GenomesGlobalStudy-wide5008G=0.733A=0.267
1000GenomesSouth AsianSub978G=0.750A=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.696A=0.304
The Genome Aggregation DatabaseAfricanSub8676G=0.683A=0.317
The Genome Aggregation DatabaseAmericanSub838G=0.820A=0.180
The Genome Aggregation DatabaseEast AsianSub1610G=0.753A=0.247
The Genome Aggregation DatabaseEuropeSub18430G=0.674A=0.325
The Genome Aggregation DatabaseGlobalStudy-wide29856G=0.685A=0.314
The Genome Aggregation DatabaseOtherSub302G=0.650A=0.350
Trans-Omics for Precision MedicineGlobalStudy-wide29116G=0.706A=0.293
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.711A=0.289
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs95080660.000643alcohol dependence21314694

eQTL of rs9508066 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9508066 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr132914202429142159E067-10346
chr132914224429142924E067-9581
chr132917477629174826E06722271
chr132917515029175200E06722645
chr132917546829175518E06722963
chr132917582129176147E06723316
chr132917659129176641E06724086
chr132917708629177186E06724581
chr132914224429142924E068-9581
chr132917515029175200E06822645
chr132917546829175518E06822963
chr132917582129176147E06823316
chr132914202429142159E069-10346
chr132914224429142924E069-9581
chr132917582129176147E06923316
chr132917659129176641E06924086
chr132910466529104756E070-47749
chr132910466529104756E071-47749
chr132914202429142159E071-10346
chr132914224429142924E071-9581
chr132917546829175518E07122963
chr132917582129176147E07123316
chr132917708629177186E07124581
chr132917731029177435E07124805
chr132917747329177644E07124968
chr132914202429142159E072-10346
chr132914224429142924E072-9581
chr132917477629174826E07222271
chr132917515029175200E07222645
chr132917546829175518E07222963
chr132917582129176147E07223316
chr132917659129176641E07224086
chr132914224429142924E073-9581
chr132910466529104756E074-47749
chr132913196429132615E074-19890
chr132913273329133095E074-19410
chr132914202429142159E074-10346
chr132914224429142924E074-9581
chr132917515029175200E07422645
chr132917546829175518E07422963
chr132917582129176147E07423316
chr132917659129176641E07424086
chr132917708629177186E07424581
chr132910466529104756E081-47749









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr132910490929107742E067-44763
chr132910490929107742E068-44763
chr132910490929107742E071-44763
chr132910490929107742E072-44763
chr132910490929107742E073-44763
chr132910490929107742E074-44763
chr132910490929107742E082-44763