Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 13 | NC_000013.11:g.27346474T>C |
GRCh37.p13 chr 13 | NC_000013.10:g.27920611T>C |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.635 | C=0.365 |
1000Genomes | American | Sub | 694 | T=0.400 | C=0.600 |
1000Genomes | East Asian | Sub | 1008 | T=0.787 | C=0.213 |
1000Genomes | Europe | Sub | 1006 | T=0.341 | C=0.659 |
1000Genomes | Global | Study-wide | 5008 | T=0.572 | C=0.428 |
1000Genomes | South Asian | Sub | 978 | T=0.630 | C=0.370 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.375 | C=0.625 |
The Genome Aggregation Database | African | Sub | 8700 | T=0.613 | C=0.387 |
The Genome Aggregation Database | American | Sub | 838 | T=0.440 | C=0.560 |
The Genome Aggregation Database | East Asian | Sub | 1616 | T=0.755 | C=0.245 |
The Genome Aggregation Database | Europe | Sub | 18474 | T=0.352 | C=0.647 |
The Genome Aggregation Database | Global | Study-wide | 29930 | T=0.451 | C=0.548 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.320 | C=0.680 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | T=0.486 | C=0.513 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.361 | C=0.639 |
PMID | Title | Author | Journal |
---|---|---|---|
21529783 | A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. | Heath AC | Biol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs9512637 | 0.0000001 | alcoholism (heaviness of drinking) | 21529783 |
rs9512637 | 1.00E-07 | alcohol dependence | 21529783 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr13 | 27885004 | 27885142 | E067 | -35469 |
chr13 | 27885256 | 27885375 | E067 | -35236 |
chr13 | 27924274 | 27924402 | E067 | 3663 |
chr13 | 27924638 | 27924692 | E067 | 4027 |
chr13 | 27924856 | 27924928 | E067 | 4245 |
chr13 | 27924980 | 27925030 | E067 | 4369 |
chr13 | 27927944 | 27928122 | E067 | 7333 |
chr13 | 27928279 | 27928343 | E067 | 7668 |
chr13 | 27928422 | 27928906 | E067 | 7811 |
chr13 | 27929403 | 27929476 | E067 | 8792 |
chr13 | 27932672 | 27933676 | E067 | 12061 |
chr13 | 27884910 | 27884970 | E068 | -35641 |
chr13 | 27885004 | 27885142 | E068 | -35469 |
chr13 | 27885256 | 27885375 | E068 | -35236 |
chr13 | 27927944 | 27928122 | E068 | 7333 |
chr13 | 27928279 | 27928343 | E068 | 7668 |
chr13 | 27928422 | 27928906 | E068 | 7811 |
chr13 | 27949837 | 27950285 | E068 | 29226 |
chr13 | 27884910 | 27884970 | E069 | -35641 |
chr13 | 27885004 | 27885142 | E069 | -35469 |
chr13 | 27885256 | 27885375 | E069 | -35236 |
chr13 | 27927160 | 27927799 | E069 | 6549 |
chr13 | 27927944 | 27928122 | E069 | 7333 |
chr13 | 27928279 | 27928343 | E069 | 7668 |
chr13 | 27928422 | 27928906 | E069 | 7811 |
chr13 | 27932672 | 27933676 | E069 | 12061 |
chr13 | 27949837 | 27950285 | E069 | 29226 |
chr13 | 27885004 | 27885142 | E071 | -35469 |
chr13 | 27885256 | 27885375 | E071 | -35236 |
chr13 | 27924274 | 27924402 | E071 | 3663 |
chr13 | 27924638 | 27924692 | E071 | 4027 |
chr13 | 27924856 | 27924928 | E071 | 4245 |
chr13 | 27924980 | 27925030 | E071 | 4369 |
chr13 | 27926558 | 27926652 | E071 | 5947 |
chr13 | 27926848 | 27927041 | E071 | 6237 |
chr13 | 27927046 | 27927117 | E071 | 6435 |
chr13 | 27928422 | 27928906 | E071 | 7811 |
chr13 | 27932672 | 27933676 | E071 | 12061 |
chr13 | 27933719 | 27933780 | E071 | 13108 |
chr13 | 27933792 | 27933842 | E071 | 13181 |
chr13 | 27949837 | 27950285 | E071 | 29226 |
chr13 | 27870740 | 27870968 | E072 | -49643 |
chr13 | 27871070 | 27871292 | E072 | -49319 |
chr13 | 27884910 | 27884970 | E072 | -35641 |
chr13 | 27885004 | 27885142 | E072 | -35469 |
chr13 | 27885256 | 27885375 | E072 | -35236 |
chr13 | 27924638 | 27924692 | E072 | 4027 |
chr13 | 27926558 | 27926652 | E072 | 5947 |
chr13 | 27926848 | 27927041 | E072 | 6237 |
chr13 | 27927046 | 27927117 | E072 | 6435 |
chr13 | 27928279 | 27928343 | E072 | 7668 |
chr13 | 27928422 | 27928906 | E072 | 7811 |
chr13 | 27927944 | 27928122 | E073 | 7333 |
chr13 | 27928279 | 27928343 | E073 | 7668 |
chr13 | 27884910 | 27884970 | E074 | -35641 |
chr13 | 27885004 | 27885142 | E074 | -35469 |
chr13 | 27885256 | 27885375 | E074 | -35236 |
chr13 | 27924274 | 27924402 | E074 | 3663 |
chr13 | 27924638 | 27924692 | E074 | 4027 |
chr13 | 27924856 | 27924928 | E074 | 4245 |
chr13 | 27924980 | 27925030 | E074 | 4369 |
chr13 | 27926848 | 27927041 | E074 | 6237 |
chr13 | 27927046 | 27927117 | E074 | 6435 |
chr13 | 27927160 | 27927799 | E074 | 6549 |
chr13 | 27927944 | 27928122 | E074 | 7333 |
chr13 | 27928279 | 27928343 | E074 | 7668 |
chr13 | 27928422 | 27928906 | E074 | 7811 |
chr13 | 27932672 | 27933676 | E074 | 12061 |