SNP Detail Info-rs9516185

Organism: Homo sapiens

Alleles: G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0083 (2501/29912,GnomAD)
T=0093 (2723/29118,TOPMED)
T=0073 (368/5008,1000G)
T=0105 (404/3854,ALSPAC)
T=0103 (381/3708,TWINSUK)

Position: chr13:86951348 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86951348G>T
GRCh37.p13 chr 13	NC_000013.10:g.87603603G>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.926	T=0.074
1000Genomes	American	Sub	694	G=0.930	T=0.070
1000Genomes	East Asian	Sub	1008	G=0.965	T=0.035
1000Genomes	Europe	Sub	1006	G=0.908	T=0.092
1000Genomes	Global	Study-wide	5008	G=0.927	T=0.073
1000Genomes	South Asian	Sub	978	G=0.900	T=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.895	T=0.105
The Genome Aggregation Database	African	Sub	8720	G=0.914	T=0.086
The Genome Aggregation Database	American	Sub	830	G=0.940	T=0.060
The Genome Aggregation Database	East Asian	Sub	1618	G=0.951	T=0.049
The Genome Aggregation Database	Europe	Sub	18442	G=0.914	T=0.085
The Genome Aggregation Database	Global	Study-wide	29912	G=0.916	T=0.083
The Genome Aggregation Database	Other	Sub	302	G=0.850	T=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.906	T=0.093
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.897	T=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9516185	0.000111	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87603603	SLITRK5	ENSG00000165300.6	G>T	7.2166e-3	-721267	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9516185