SNP Detail Info-rs9516386

Organism: Homo sapiens

Alleles: C>G / C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0066 (1988/29944,GnomAD)
G=0057 (283/5008,1000G)
G=0104 (402/3854,ALSPAC)
G=0103 (381/3708,TWINSUK)

Position: chr13:87063482 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.983	G=0.017
1000Genomes	American	Sub	694	C=0.940	G=0.060
1000Genomes	East Asian	Sub	1008	C=0.970	G=0.030
1000Genomes	Europe	Sub	1006	C=0.908	G=0.092
1000Genomes	Global	Study-wide	5008	C=0.943	G=0.057
1000Genomes	South Asian	Sub	978	C=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.896	G=0.104
The Genome Aggregation Database	African	Sub	8716	C=0.971	T=0.000
The Genome Aggregation Database	American	Sub	836	C=0.940	T=0.00,
The Genome Aggregation Database	East Asian	Sub	1614	C=0.954	T=0.001
The Genome Aggregation Database	Europe	Sub	18476	C=0.915	T=0.000
The Genome Aggregation Database	Global	Study-wide	29944	C=0.933	T=0.000
The Genome Aggregation Database	Other	Sub	302	C=0.850	T=0.00,
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.897	G=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9516386	0.000115	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87715737	SLITRK5	ENSG00000165300.6	C>G	7.2166e-3	-609133	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9516386