SNP Detail Info-rs9516391

Organism: Homo sapiens

Alleles: A>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0158 (4757/29938,GnomAD)
C=0204 (5960/29118,TOPMED)
C=0157 (785/5008,1000G)
C=0106 (410/3854,ALSPAC)
C=0103 (383/3708,TWINSUK)

Position: chr13:87065008 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87065008A>C
GRCh37.p13 chr 13	NC_000013.10:g.87717263A>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.628	C=0.372
1000Genomes	American	Sub	694	A=0.900	C=0.100
1000Genomes	East Asian	Sub	1008	A=0.970	C=0.030
1000Genomes	Europe	Sub	1006	A=0.906	C=0.094
1000Genomes	Global	Study-wide	5008	A=0.843	C=0.157
1000Genomes	South Asian	Sub	978	A=0.900	C=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.894	C=0.106
The Genome Aggregation Database	African	Sub	8694	A=0.657	C=0.343
The Genome Aggregation Database	American	Sub	836	A=0.930	C=0.070
The Genome Aggregation Database	East Asian	Sub	1620	A=0.954	C=0.046
The Genome Aggregation Database	Europe	Sub	18490	A=0.913	C=0.086
The Genome Aggregation Database	Global	Study-wide	29938	A=0.841	C=0.158
The Genome Aggregation Database	Other	Sub	298	A=0.850	C=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.795	C=0.204
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.897	C=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9516391	0.000113	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87717263	SLITRK5	ENSG00000165300.6	A>C	7.2166e-3	-607607	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9516391