SNP Detail Info-rs9516421

Organism: Homo sapiens

Alleles: G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0152 (4564/29928,GnomAD)
T=0193 (5647/29118,TOPMED)
T=0150 (750/5008,1000G)
T=0106 (410/3854,ALSPAC)
T=0104 (386/3708,TWINSUK)

Position: chr13:87079343 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87079343G>T
GRCh37.p13 chr 13	NC_000013.10:g.87731598G>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.652	T=0.348
1000Genomes	American	Sub	694	G=0.900	T=0.100
1000Genomes	East Asian	Sub	1008	G=0.970	T=0.030
1000Genomes	Europe	Sub	1006	G=0.906	T=0.094
1000Genomes	Global	Study-wide	5008	G=0.850	T=0.150
1000Genomes	South Asian	Sub	978	G=0.900	T=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.894	T=0.106
The Genome Aggregation Database	African	Sub	8688	G=0.678	T=0.322
The Genome Aggregation Database	American	Sub	838	G=0.930	T=0.070
The Genome Aggregation Database	East Asian	Sub	1618	G=0.956	T=0.044
The Genome Aggregation Database	Europe	Sub	18484	G=0.913	T=0.086
The Genome Aggregation Database	Global	Study-wide	29928	G=0.847	T=0.152
The Genome Aggregation Database	Other	Sub	300	G=0.850	T=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.806	T=0.193
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.896	T=0.104

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9516421	0.000106	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87731598	SLITRK5	ENSG00000165300.6	G>T	7.2166e-3	-593272	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr13	87780751	87780970	E070	49153
chr13	87780990	87781070	E070	49392
chr13	87781139	87781194	E070	49541
chr13	87781361	87781523	E070	49763

rs9516421