rs9516428

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0113 (3391/29956,GnomAD)
C=0135 (3952/29118,TOPMED)
C=0108 (539/5008,1000G)
C=0104 (399/3854,ALSPAC)
C=0104 (385/3708,TWINSUK)
chr13:87084098 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87084098T>C
GRCh37.p13 chr 13NC_000013.10:g.87736353T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.818C=0.182
1000GenomesAmericanSub694T=0.920C=0.080
1000GenomesEast AsianSub1008T=0.968C=0.032
1000GenomesEuropeSub1006T=0.906C=0.094
1000GenomesGlobalStudy-wide5008T=0.892C=0.108
1000GenomesSouth AsianSub978T=0.880C=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.896C=0.104
The Genome Aggregation DatabaseAfricanSub8720T=0.815C=0.185
The Genome Aggregation DatabaseAmericanSub836T=0.920C=0.080
The Genome Aggregation DatabaseEast AsianSub1620T=0.954C=0.046
The Genome Aggregation DatabaseEuropeSub18478T=0.913C=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29956T=0.886C=0.113
The Genome Aggregation DatabaseOtherSub302T=0.850C=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.864C=0.135
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.896C=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95164280.00014alcohol consumption23743675

eQTL of rs9516428 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9516428 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07044398
chr138778099087781070E07044637
chr138778113987781194E07044786
chr138778136187781523E07045008
chr138778160987781698E07045256
chr138778189787782225E07045544
chr138778224887782420E07045895
chr138778273087782844E07046377
chr138778399687784117E07047643