rs9516447

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0110 (3294/29914,GnomAD)
A=0129 (3770/29118,TOPMED)
A=0104 (521/5008,1000G)
A=0104 (400/3854,ALSPAC)
A=0104 (386/3708,TWINSUK)
chr13:87093830 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87093830T>A
GRCh37.p13 chr 13NC_000013.10:g.87746085T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.829A=0.171
1000GenomesAmericanSub694T=0.920A=0.080
1000GenomesEast AsianSub1008T=0.968A=0.032
1000GenomesEuropeSub1006T=0.906A=0.094
1000GenomesGlobalStudy-wide5008T=0.896A=0.104
1000GenomesSouth AsianSub978T=0.890A=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.896A=0.104
The Genome Aggregation DatabaseAfricanSub8704T=0.825A=0.175
The Genome Aggregation DatabaseAmericanSub836T=0.930A=0.070
The Genome Aggregation DatabaseEast AsianSub1616T=0.954A=0.046
The Genome Aggregation DatabaseEuropeSub18456T=0.914A=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29914T=0.889A=0.110
The Genome Aggregation DatabaseOtherSub302T=0.850A=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.870A=0.129
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.896A=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95164470.000119alcohol consumption23743675

eQTL of rs9516447 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9516447 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07034666
chr138778099087781070E07034905
chr138778113987781194E07035054
chr138778136187781523E07035276
chr138778160987781698E07035524
chr138778189787782225E07035812
chr138778224887782420E07036163
chr138778273087782844E07036645
chr138778399687784117E07037911