rs9516465

Homo sapiens
A>C / A>G
None
Check p-value
SNV (Single Nucleotide Variation)
C=0136 (4068/29796,GnomAD)
C=0133 (664/5008,1000G)
C=0105 (403/3854,ALSPAC)
C=0104 (386/3708,TWINSUK)
chr13:87103821 (GRCh38.p7) (13q31.2)
AD
GWASdb2
1   publication(s)
See rs on genome
180 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87103821A>C
GRCh38.p7 chr 13NC_000013.11:g.87103821A>G
GRCh37.p13 chr 13NC_000013.10:g.87756076A>C
GRCh37.p13 chr 13NC_000013.10:g.87756076A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.731C=0.269
1000GenomesAmericanSub694A=0.910C=0.090
1000GenomesEast AsianSub1008A=0.965C=0.035
1000GenomesEuropeSub1006A=0.906C=0.094
1000GenomesGlobalStudy-wide5008A=0.867C=0.133
1000GenomesSouth AsianSub978A=0.880C=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.895C=0.105
The Genome Aggregation DatabaseAfricanSub8702A=0.737C=0.263
The Genome Aggregation DatabaseAmericanSub836A=0.920C=0.080
The Genome Aggregation DatabaseEast AsianSub1614A=0.954C=0.046
The Genome Aggregation DatabaseEuropeSub18342A=0.913C=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29796A=0.863C=0.136
The Genome Aggregation DatabaseOtherSub302A=0.840C=0.160
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.896C=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95164650.000143alcohol consumption23743675

eQTL of rs9516465 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9516465 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr134457705444577153E067-31810
chr134457770444577744E067-31219
chr134457784744577892E067-31071
chr134458706344587386E067-21577
chr134458744444587596E067-21367
chr134458765344588369E067-20594
chr134461879544619059E0679832
chr134461906744619239E06710104
chr134461928544619345E06710322
chr134461943744619564E06710474
chr134461962344619764E06710660
chr134461983144619896E06710868
chr134462019844620334E06711235
chr134462042044620512E06711457
chr134462052044620588E06711557
chr134462604344627894E06717080
chr134462792644628010E06718963
chr134455971644560163E068-48800
chr134456017244560384E068-48579
chr134456051144561100E068-47863
chr134456116244561257E068-47706
chr134456577344566386E068-42577
chr134457705444577153E068-31810
chr134457893844579017E068-29946
chr134457907844579289E068-29674
chr134458706344587386E068-21577
chr134458744444587596E068-21367
chr134458765344588369E068-20594
chr134458878644588980E068-19983
chr134458912544589175E068-19788
chr134458937544589473E068-19490
chr134458950344589618E068-19345
chr134458983044589886E068-19077
chr134459179344591909E068-17054
chr134461879544619059E0689832
chr134461906744619239E06810104
chr134461928544619345E06810322
chr134461943744619564E06810474
chr134461962344619764E06810660
chr134461983144619896E06810868
chr134462019844620334E06811235
chr134462604344627894E06817080
chr134463259544632647E06823632
chr134463271944633060E06823756
chr134464019244640325E06831229
chr134464037944640429E06831416
chr134457705444577153E069-31810
chr134458706344587386E069-21577
chr134458744444587596E069-21367
chr134458765344588369E069-20594
chr134461879544619059E0699832
chr134461906744619239E06910104
chr134461928544619345E06910322
chr134461943744619564E06910474
chr134461962344619764E06910660
chr134461983144619896E06910868
chr134462604344627894E06917080
chr134462792644628010E06918963
chr134456577344566386E070-42577
chr134456693844567199E070-41764
chr134458765344588369E070-20594
chr134461906744619239E07010104
chr134461928544619345E07010322
chr134461943744619564E07010474
chr134461962344619764E07010660
chr134461983144619896E07010868
chr134462019844620334E07011235
chr134455951044559662E071-49301
chr134455971644560163E071-48800
chr134456017244560384E071-48579
chr134456051144561100E071-47863
chr134457705444577153E071-31810
chr134458706344587386E071-21577
chr134458744444587596E071-21367
chr134458765344588369E071-20594
chr134458878644588980E071-19983
chr134459275944592858E071-16105
chr134459297644593073E071-15890
chr134461871344618786E0719750
chr134461879544619059E0719832
chr134461906744619239E07110104
chr134461928544619345E07110322
chr134461943744619564E07110474
chr134461962344619764E07110660
chr134461983144619896E07110868
chr134462604344627894E07117080
chr134457705444577153E072-31810
chr134458706344587386E072-21577
chr134458744444587596E072-21367
chr134458765344588369E072-20594
chr134461879544619059E0729832
chr134461906744619239E07210104
chr134461928544619345E07210322
chr134461943744619564E07210474
chr134461962344619764E07210660
chr134462604344627894E07217080
chr134462792644628010E07218963
chr134458744444587596E073-21367
chr134458765344588369E073-20594
chr134461906744619239E07310104
chr134461928544619345E07310322
chr134461943744619564E07310474
chr134461962344619764E07310660
chr134461983144619896E07310868
chr134462019844620334E07311235
chr134462042044620512E07311457
chr134462052044620588E07311557
chr134462604344627894E07317080
chr134462792644628010E07318963
chr134455951044559662E074-49301
chr134457705444577153E074-31810
chr134458706344587386E074-21577
chr134458744444587596E074-21367
chr134458765344588369E074-20594
chr134458878644588980E074-19983
chr134458912544589175E074-19788
chr134461871344618786E0749750
chr134461879544619059E0749832
chr134461906744619239E07410104
chr134461928544619345E07410322
chr134461943744619564E07410474
chr134461962344619764E07410660
chr134461983144619896E07410868
chr134456423144564541E081-44422
chr134456460344564653E081-44310
chr134456465644564696E081-44267
chr134456479844564903E081-44060
chr134456493844564978E081-43985
chr134456505544565095E081-43868
chr134456551744565571E081-43392
chr134456559644565637E081-43326
chr134456564944565714E081-43249
chr134456577344566386E081-42577
chr134456693844567199E081-41764
chr134456921444570141E081-38822
chr134458706344587386E081-21577
chr134458744444587596E081-21367
chr134458765344588369E081-20594
chr134461906744619239E08110104
chr134461928544619345E08110322
chr134461943744619564E08110474
chr134461962344619764E08110660
chr134461983144619896E08110868
chr134462019844620334E08111235
chr134462042044620512E08111457
chr134462052044620588E08111557
chr134462064044620863E08111677
chr134462086844620978E08111905
chr134462499944625270E08116036
chr134462536944625419E08116406
chr134462548844625538E08116525
chr134462564944625947E08116686
chr134462595944626036E08116996
chr134462604344627894E08117080
chr134462792644628010E08118963
chr134462807144628114E08119108
chr134462814244628196E08119179
chr134462849244628596E08119529
chr134464887044649025E08139907
chr134464912044649582E08140157
chr134464968744650035E08140724
chr134456551744565571E082-43392
chr134456559644565637E082-43326
chr134456564944565714E082-43249
chr134456577344566386E082-42577
chr134456693844567199E082-41764
chr134461906744619239E08210104
chr134461928544619345E08210322
chr134461943744619564E08210474
chr134461962344619764E08210660
chr134462445044624512E08215487
chr134462451544624679E08215552
chr134462469344624881E08215730
chr134462499944625270E08216036
chr134462536944625419E08216406
chr134462548844625538E08216525
chr134462564944625947E08216686
chr134464860244648673E08239639
chr134464887044649025E08239907
chr134464912044649582E08240157