| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 13 | NC_000013.11:g.87166282G>A |
| GRCh37.p13 chr 13 | NC_000013.10:g.87818537G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.986 | A=0.014 |
| 1000Genomes | American | Sub | 694 | G=0.940 | A=0.060 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.968 | A=0.032 |
| 1000Genomes | Europe | Sub | 1006 | G=0.908 | A=0.092 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.940 | A=0.060 |
| 1000Genomes | South Asian | Sub | 978 | G=0.880 | A=0.120 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.895 | A=0.105 |
| The Genome Aggregation Database | African | Sub | 8730 | G=0.976 | A=0.024 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.950 | A=0.050 |
| The Genome Aggregation Database | East Asian | Sub | 1620 | G=0.953 | A=0.047 |
| The Genome Aggregation Database | Europe | Sub | 18494 | G=0.914 | A=0.085 |
| The Genome Aggregation Database | Global | Study-wide | 29984 | G=0.934 | A=0.065 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.850 | A=0.150 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.933 | A=0.066 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.896 | A=0.104 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23743675 | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. | Kapoor M | Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs9516565 | 0.000171 | alcohol consumption | 23743675 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
|---|---|---|---|---|---|---|
| Chr13:87818537 | SLITRK5 | ENSG00000165300.6 | G>A | 7.2166e-3 | -506333 | Cerebellar_Hemisphere |
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr13 | 87780751 | 87780970 | E070 | -37567 |
| chr13 | 87780990 | 87781070 | E070 | -37467 |
| chr13 | 87781139 | 87781194 | E070 | -37343 |
| chr13 | 87781361 | 87781523 | E070 | -37014 |
| chr13 | 87781609 | 87781698 | E070 | -36839 |
| chr13 | 87781897 | 87782225 | E070 | -36312 |
| chr13 | 87782248 | 87782420 | E070 | -36117 |
| chr13 | 87782730 | 87782844 | E070 | -35693 |
| chr13 | 87783996 | 87784117 | E070 | -34420 |