| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 13 | NC_000013.11:g.87168105C>G |
| GRCh37.p13 chr 13 | NC_000013.10:g.87820360C>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | C=0.942 | G=0.058 |
| 1000Genomes | American | Sub | 694 | C=0.930 | G=0.070 |
| 1000Genomes | East Asian | Sub | 1008 | C=0.968 | G=0.032 |
| 1000Genomes | Europe | Sub | 1006 | C=0.908 | G=0.092 |
| 1000Genomes | Global | Study-wide | 5008 | C=0.927 | G=0.073 |
| 1000Genomes | South Asian | Sub | 978 | C=0.880 | G=0.120 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.895 | G=0.105 |
| The Genome Aggregation Database | African | Sub | 8708 | C=0.931 | G=0.069 |
| The Genome Aggregation Database | American | Sub | 836 | C=0.940 | G=0.060 |
| The Genome Aggregation Database | East Asian | Sub | 1622 | C=0.953 | G=0.047 |
| The Genome Aggregation Database | Europe | Sub | 18472 | C=0.914 | G=0.085 |
| The Genome Aggregation Database | Global | Study-wide | 29938 | C=0.921 | G=0.078 |
| The Genome Aggregation Database | Other | Sub | 300 | C=0.840 | G=0.160 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.913 | G=0.086 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.896 | G=0.104 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23743675 | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. | Kapoor M | Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs9516574 | 0.000171 | alcohol consumption | 23743675 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
|---|---|---|---|---|---|---|
| Chr13:87820360 | SLITRK5 | ENSG00000165300.6 | C>G | 7.2166e-3 | -504510 | Cerebellar_Hemisphere |
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr13 | 87780751 | 87780970 | E070 | -39390 |
| chr13 | 87780990 | 87781070 | E070 | -39290 |
| chr13 | 87781139 | 87781194 | E070 | -39166 |
| chr13 | 87781361 | 87781523 | E070 | -38837 |
| chr13 | 87781609 | 87781698 | E070 | -38662 |
| chr13 | 87781897 | 87782225 | E070 | -38135 |
| chr13 | 87782248 | 87782420 | E070 | -37940 |
| chr13 | 87782730 | 87782844 | E070 | -37516 |
| chr13 | 87783996 | 87784117 | E070 | -36243 |