rs9519839

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0127 (3825/29976,GnomAD)
A=0101 (2951/29118,TOPMED)
A=0140 (701/5008,1000G)
A=0130 (502/3854,ALSPAC)
A=0131 (484/3708,TWINSUK)
chr13:105904212 (GRCh38.p7) (13q33.2)
CD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.105904212G>A
GRCh37.p13 chr 13NC_000013.10:g.106556561G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.952A=0.048
1000GenomesAmericanSub694G=0.900A=0.100
1000GenomesEast AsianSub1008G=0.718A=0.282
1000GenomesEuropeSub1006G=0.856A=0.144
1000GenomesGlobalStudy-wide5008G=0.860A=0.140
1000GenomesSouth AsianSub978G=0.860A=0.140
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.870A=0.130
The Genome Aggregation DatabaseAfricanSub8732G=0.941A=0.059
The Genome Aggregation DatabaseAmericanSub836G=0.860A=0.140
The Genome Aggregation DatabaseEast AsianSub1618G=0.650A=0.350
The Genome Aggregation DatabaseEuropeSub18488G=0.860A=0.139
The Genome Aggregation DatabaseGlobalStudy-wide29976G=0.872A=0.127
The Genome Aggregation DatabaseOtherSub302G=0.840A=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.898A=0.101
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.869A=0.131
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs95198390.0000153cocaine dependence23958962
rs95198390.000157cocaine dependence,AA23958962

eQTL of rs9519839 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9519839 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13106559130106559550E0702569
chr13106516206106516483E081-40078
chr13106559130106559550E0812569
chr13106559130106559550E0822569