SNP Detail Info-rs9519839

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0127 (3825/29976,GnomAD)
A=0101 (2951/29118,TOPMED)
A=0140 (701/5008,1000G)
A=0130 (502/3854,ALSPAC)
A=0131 (484/3708,TWINSUK)

Position: chr13:105904212 (GRCh38.p7) (13q33.2)

Phenotype: CD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.105904212G>A
GRCh37.p13 chr 13	NC_000013.10:g.106556561G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.952	A=0.048
1000Genomes	American	Sub	694	G=0.900	A=0.100
1000Genomes	East Asian	Sub	1008	G=0.718	A=0.282
1000Genomes	Europe	Sub	1006	G=0.856	A=0.144
1000Genomes	Global	Study-wide	5008	G=0.860	A=0.140
1000Genomes	South Asian	Sub	978	G=0.860	A=0.140
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.870	A=0.130
The Genome Aggregation Database	African	Sub	8732	G=0.941	A=0.059
The Genome Aggregation Database	American	Sub	836	G=0.860	A=0.140
The Genome Aggregation Database	East Asian	Sub	1618	G=0.650	A=0.350
The Genome Aggregation Database	Europe	Sub	18488	G=0.860	A=0.139
The Genome Aggregation Database	Global	Study-wide	29976	G=0.872	A=0.127
The Genome Aggregation Database	Other	Sub	302	G=0.840	A=0.160
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.898	A=0.101
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.869	A=0.131

PMID	Title	Author	Journal
23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Gelernter J	Mol Psychiatry

SNP ID	p-value	Traits	Study
rs9519839	0.0000153	cocaine dependence	23958962
rs9519839	0.000157	cocaine dependence,AA	23958962

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr13	106559130	106559550	E070	2569
chr13	106516206	106516483	E081	-40078
chr13	106559130	106559550	E081	2569
chr13	106559130	106559550	E082	2569

rs9519839