SNP Detail Info-rs9523806

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LINC00430 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0065 (1947/29956,GnomAD)
G=0066 (1923/29118,TOPMED)
G=0057 (285/5008,1000G)
G=0104 (401/3854,ALSPAC)
G=0100 (370/3708,TWINSUK)

Position: chr13:86909774 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86909774A>G
GRCh37.p13 chr 13	NC_000013.10:g.87562029A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LINC00430 transcript	NR_132371.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.986	G=0.014
1000Genomes	American	Sub	694	A=0.940	G=0.060
1000Genomes	East Asian	Sub	1008	A=0.965	G=0.035
1000Genomes	Europe	Sub	1006	A=0.908	G=0.092
1000Genomes	Global	Study-wide	5008	A=0.943	G=0.057
1000Genomes	South Asian	Sub	978	A=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.896	G=0.104
The Genome Aggregation Database	African	Sub	8730	A=0.978	G=0.022
The Genome Aggregation Database	American	Sub	838	A=0.950	G=0.050
The Genome Aggregation Database	East Asian	Sub	1608	A=0.951	G=0.049
The Genome Aggregation Database	Europe	Sub	18478	A=0.914	G=0.085
The Genome Aggregation Database	Global	Study-wide	29956	A=0.935	G=0.065
The Genome Aggregation Database	Other	Sub	302	A=0.850	G=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.934	G=0.066
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.900	G=0.100

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9523806	0.000197	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87562029	SLITRK5	ENSG00000165300.6	A>G	7.2166e-3	-762841	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr13	87522728	87523350	E081	-38679
chr13	87579430	87579480	E081	17401

rs9523806