rs9523806

Homo sapiens
A>G
LINC00430 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0065 (1947/29956,GnomAD)
G=0066 (1923/29118,TOPMED)
G=0057 (285/5008,1000G)
G=0104 (401/3854,ALSPAC)
G=0100 (370/3708,TWINSUK)
chr13:86909774 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.86909774A>G
GRCh37.p13 chr 13NC_000013.10:g.87562029A>G

Gene: LINC00430, long intergenic non-protein coding RNA 430(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC00430 transcriptNR_132371.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.986G=0.014
1000GenomesAmericanSub694A=0.940G=0.060
1000GenomesEast AsianSub1008A=0.965G=0.035
1000GenomesEuropeSub1006A=0.908G=0.092
1000GenomesGlobalStudy-wide5008A=0.943G=0.057
1000GenomesSouth AsianSub978A=0.900G=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.896G=0.104
The Genome Aggregation DatabaseAfricanSub8730A=0.978G=0.022
The Genome Aggregation DatabaseAmericanSub838A=0.950G=0.050
The Genome Aggregation DatabaseEast AsianSub1608A=0.951G=0.049
The Genome Aggregation DatabaseEuropeSub18478A=0.914G=0.085
The Genome Aggregation DatabaseGlobalStudy-wide29956A=0.935G=0.065
The Genome Aggregation DatabaseOtherSub302A=0.850G=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.934G=0.066
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.900G=0.100
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95238060.000197alcohol consumption23743675

eQTL of rs9523806 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr13:87562029SLITRK5ENSG00000165300.6A>G7.2166e-3-762841Cerebellar_Hemisphere

meQTL of rs9523806 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138752272887523350E081-38679
chr138757943087579480E08117401