SNP Detail Info-rs9523867

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LINC00430 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0083 (2489/29942,GnomAD)
A=0093 (2710/29118,TOPMED)
A=0073 (368/5008,1000G)
A=0104 (402/3854,ALSPAC)
A=0101 (374/3708,TWINSUK)

Position: chr13:86927231 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86927231G>A
GRCh37.p13 chr 13	NC_000013.10:g.87579486G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LINC00430 transcript	NR_132371.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.926	A=0.074
1000Genomes	American	Sub	694	G=0.930	A=0.070
1000Genomes	East Asian	Sub	1008	G=0.965	A=0.035
1000Genomes	Europe	Sub	1006	G=0.908	A=0.092
1000Genomes	Global	Study-wide	5008	G=0.927	A=0.073
1000Genomes	South Asian	Sub	978	G=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.896	A=0.104
The Genome Aggregation Database	African	Sub	8704	G=0.915	A=0.085
The Genome Aggregation Database	American	Sub	836	G=0.940	A=0.060
The Genome Aggregation Database	East Asian	Sub	1620	G=0.951	A=0.049
The Genome Aggregation Database	Europe	Sub	18480	G=0.914	A=0.085
The Genome Aggregation Database	Global	Study-wide	29942	G=0.916	A=0.083
The Genome Aggregation Database	Other	Sub	302	G=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.906	A=0.093
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.899	A=0.101

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9523867	0.000197	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87579486	SLITRK5	ENSG00000165300.6	G>A	7.2166e-3	-745384	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9523867