rs9523884

Homo sapiens
C>A
LINC00430 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0064 (1940/29896,GnomAD)
A=0066 (1922/29118,TOPMED)
A=0057 (285/5008,1000G)
A=0104 (400/3854,ALSPAC)
A=0101 (373/3708,TWINSUK)
chr13:86932483 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.86932483C>A
GRCh37.p13 chr 13NC_000013.10:g.87584738C>A

Gene: LINC00430, long intergenic non-protein coding RNA 430(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC00430 transcriptNR_132371.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.986A=0.014
1000GenomesAmericanSub694C=0.940A=0.060
1000GenomesEast AsianSub1008C=0.965A=0.035
1000GenomesEuropeSub1006C=0.908A=0.092
1000GenomesGlobalStudy-wide5008C=0.943A=0.057
1000GenomesSouth AsianSub978C=0.900A=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.896A=0.104
The Genome Aggregation DatabaseAfricanSub8728C=0.978A=0.022
The Genome Aggregation DatabaseAmericanSub830C=0.950A=0.050
The Genome Aggregation DatabaseEast AsianSub1614C=0.950A=0.050
The Genome Aggregation DatabaseEuropeSub18422C=0.914A=0.085
The Genome Aggregation DatabaseGlobalStudy-wide29896C=0.935A=0.064
The Genome Aggregation DatabaseOtherSub302C=0.850A=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.934A=0.066
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.899A=0.101
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95238840.000163alcohol consumption23743675

eQTL of rs9523884 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr13:87584738SLITRK5ENSG00000165300.6C>A7.2166e-3-740132Cerebellar_Hemisphere

meQTL of rs9523884 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138757943087579480E081-5258