SNP Detail Info-rs9523884

Organism: Homo sapiens

Alleles: C>A

Gene : Feature

LINC00430 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0064 (1940/29896,GnomAD)
A=0066 (1922/29118,TOPMED)
A=0057 (285/5008,1000G)
A=0104 (400/3854,ALSPAC)
A=0101 (373/3708,TWINSUK)

Position: chr13:86932483 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86932483C>A
GRCh37.p13 chr 13	NC_000013.10:g.87584738C>A

Molecule type	Change	Amino acid[Codon]	SO Term
LINC00430 transcript	NR_132371.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.986	A=0.014
1000Genomes	American	Sub	694	C=0.940	A=0.060
1000Genomes	East Asian	Sub	1008	C=0.965	A=0.035
1000Genomes	Europe	Sub	1006	C=0.908	A=0.092
1000Genomes	Global	Study-wide	5008	C=0.943	A=0.057
1000Genomes	South Asian	Sub	978	C=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.896	A=0.104
The Genome Aggregation Database	African	Sub	8728	C=0.978	A=0.022
The Genome Aggregation Database	American	Sub	830	C=0.950	A=0.050
The Genome Aggregation Database	East Asian	Sub	1614	C=0.950	A=0.050
The Genome Aggregation Database	Europe	Sub	18422	C=0.914	A=0.085
The Genome Aggregation Database	Global	Study-wide	29896	C=0.935	A=0.064
The Genome Aggregation Database	Other	Sub	302	C=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.934	A=0.066
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.899	A=0.101

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9523884	0.000163	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87584738	SLITRK5	ENSG00000165300.6	C>A	7.2166e-3	-740132	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9523884