rs9523907

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0074 (2231/29890,GnomAD)
A=0081 (2361/29118,TOPMED)
A=0066 (333/5008,1000G)
A=0104 (399/3854,ALSPAC)
A=0100 (372/3708,TWINSUK)
chr13:86941307 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.86941307G>A
GRCh37.p13 chr 13NC_000013.10:g.87593562G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.951A=0.049
1000GenomesAmericanSub694G=0.940A=0.060
1000GenomesEast AsianSub1008G=0.965A=0.035
1000GenomesEuropeSub1006G=0.908A=0.092
1000GenomesGlobalStudy-wide5008G=0.934A=0.066
1000GenomesSouth AsianSub978G=0.900A=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.896A=0.104
The Genome Aggregation DatabaseAfricanSub8708G=0.945A=0.055
The Genome Aggregation DatabaseAmericanSub832G=0.950A=0.050
The Genome Aggregation DatabaseEast AsianSub1614G=0.951A=0.049
The Genome Aggregation DatabaseEuropeSub18434G=0.914A=0.085
The Genome Aggregation DatabaseGlobalStudy-wide29890G=0.925A=0.074
The Genome Aggregation DatabaseOtherSub302G=0.850A=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.918A=0.081
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.900A=0.100
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95239070.000168alcohol consumption23743675

eQTL of rs9523907 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr13:87593562SLITRK5ENSG00000165300.6G>A7.2166e-3-731308Cerebellar_Hemisphere

meQTL of rs9523907 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138757943087579480E081-14082