SNP Detail Info-rs9523907

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0074 (2231/29890,GnomAD)
A=0081 (2361/29118,TOPMED)
A=0066 (333/5008,1000G)
A=0104 (399/3854,ALSPAC)
A=0100 (372/3708,TWINSUK)

Position: chr13:86941307 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86941307G>A
GRCh37.p13 chr 13	NC_000013.10:g.87593562G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.951	A=0.049
1000Genomes	American	Sub	694	G=0.940	A=0.060
1000Genomes	East Asian	Sub	1008	G=0.965	A=0.035
1000Genomes	Europe	Sub	1006	G=0.908	A=0.092
1000Genomes	Global	Study-wide	5008	G=0.934	A=0.066
1000Genomes	South Asian	Sub	978	G=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.896	A=0.104
The Genome Aggregation Database	African	Sub	8708	G=0.945	A=0.055
The Genome Aggregation Database	American	Sub	832	G=0.950	A=0.050
The Genome Aggregation Database	East Asian	Sub	1614	G=0.951	A=0.049
The Genome Aggregation Database	Europe	Sub	18434	G=0.914	A=0.085
The Genome Aggregation Database	Global	Study-wide	29890	G=0.925	A=0.074
The Genome Aggregation Database	Other	Sub	302	G=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.918	A=0.081
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.900	A=0.100

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9523907	0.000168	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87593562	SLITRK5	ENSG00000165300.6	G>A	7.2166e-3	-731308	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9523907