SNP Detail Info-rs9523964

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0083 (2493/29902,GnomAD)
G=0093 (2723/29118,TOPMED)
G=0073 (368/5008,1000G)
G=0105 (406/3854,ALSPAC)
G=0103 (381/3708,TWINSUK)

Position: chr13:86954079 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86954079A>G
GRCh37.p13 chr 13	NC_000013.10:g.87606334A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.926	G=0.074
1000Genomes	American	Sub	694	A=0.930	G=0.070
1000Genomes	East Asian	Sub	1008	A=0.965	G=0.035
1000Genomes	Europe	Sub	1006	A=0.908	G=0.092
1000Genomes	Global	Study-wide	5008	A=0.927	G=0.073
1000Genomes	South Asian	Sub	978	A=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.895	G=0.105
The Genome Aggregation Database	African	Sub	8700	A=0.915	G=0.085
The Genome Aggregation Database	American	Sub	836	A=0.940	G=0.060
The Genome Aggregation Database	East Asian	Sub	1610	A=0.951	G=0.049
The Genome Aggregation Database	Europe	Sub	18454	A=0.914	G=0.085
The Genome Aggregation Database	Global	Study-wide	29902	A=0.916	G=0.083
The Genome Aggregation Database	Other	Sub	302	A=0.850	G=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.906	G=0.093
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.897	G=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9523964	9.86E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87606334	SLITRK5	ENSG00000165300.6	A>G	7.2166e-3	-718536	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9523964