rs9523980

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0074 (2238/29966,GnomAD)
T=0081 (2364/29118,TOPMED)
T=0066 (332/5008,1000G)
T=0105 (405/3854,ALSPAC)
T=0102 (380/3708,TWINSUK)
chr13:86956433 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.86956433C>T
GRCh37.p13 chr 13NC_000013.10:g.87608688C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.951T=0.049
1000GenomesAmericanSub694C=0.940T=0.060
1000GenomesEast AsianSub1008C=0.965T=0.035
1000GenomesEuropeSub1006C=0.908T=0.092
1000GenomesGlobalStudy-wide5008C=0.934T=0.066
1000GenomesSouth AsianSub978C=0.900T=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.895T=0.105
The Genome Aggregation DatabaseAfricanSub8720C=0.945T=0.055
The Genome Aggregation DatabaseAmericanSub838C=0.950T=0.050
The Genome Aggregation DatabaseEast AsianSub1618C=0.951T=0.049
The Genome Aggregation DatabaseEuropeSub18488C=0.914T=0.085
The Genome Aggregation DatabaseGlobalStudy-wide29966C=0.925T=0.074
The Genome Aggregation DatabaseOtherSub302C=0.850T=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.918T=0.081
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.898T=0.102
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95239809.86E-05alcohol consumption23743675

eQTL of rs9523980 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr13:87608688SLITRK5ENSG00000165300.6C>T7.2166e-3-716182Cerebellar_Hemisphere

meQTL of rs9523980 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138757943087579480E081-29208