SNP Detail Info-rs9524259

Organism: Homo sapiens

Alleles: T>G

Gene : Feature

LOC105370301 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0087 (2625/29936,GnomAD)
G=0098 (2866/29118,TOPMED)
G=0080 (403/5008,1000G)
G=0105 (405/3854,ALSPAC)
G=0103 (381/3708,TWINSUK)

Position: chr13:87018205 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87018205T>G
GRCh37.p13 chr 13	NC_000013.10:g.87670460T>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105370301 transcript variant X1	XR_931623.2:n.	N/A	Intron Variant
LOC105370301 transcript variant X2	XR_931624.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.899	G=0.101
1000Genomes	American	Sub	694	T=0.930	G=0.070
1000Genomes	East Asian	Sub	1008	T=0.967	G=0.033
1000Genomes	Europe	Sub	1006	T=0.906	G=0.094
1000Genomes	Global	Study-wide	5008	T=0.920	G=0.080
1000Genomes	South Asian	Sub	978	T=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.895	G=0.105
The Genome Aggregation Database	African	Sub	8718	T=0.900	G=0.100
The Genome Aggregation Database	American	Sub	838	T=0.940	G=0.060
The Genome Aggregation Database	East Asian	Sub	1618	T=0.953	G=0.047
The Genome Aggregation Database	Europe	Sub	18460	T=0.914	G=0.085
The Genome Aggregation Database	Global	Study-wide	29936	T=0.912	G=0.087
The Genome Aggregation Database	Other	Sub	302	T=0.850	G=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.901	G=0.098
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.897	G=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9524259	8.6E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87670460	SLITRK5	ENSG00000165300.6	T>G	7.2166e-3	-654410	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9524259