SNP Detail Info-rs9524349

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

LOC105370301 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0087 (2623/29962,GnomAD)
C=0097 (2824/29118,TOPMED)
C=0079 (397/5008,1000G)
C=0104 (402/3854,ALSPAC)
C=0103 (383/3708,TWINSUK)

Position: chr13:87048880 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87048880T>C
GRCh37.p13 chr 13	NC_000013.10:g.87701135T>C

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105370301 transcript variant X1	XR_931623.2:n.	N/A	Intron Variant
LOC105370301 transcript variant X2	XR_931624.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.902	C=0.098
1000Genomes	American	Sub	694	T=0.930	C=0.070
1000Genomes	East Asian	Sub	1008	T=0.970	C=0.030
1000Genomes	Europe	Sub	1006	T=0.907	C=0.093
1000Genomes	Global	Study-wide	5008	T=0.921	C=0.079
1000Genomes	South Asian	Sub	978	T=0.900	C=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.896	C=0.104
The Genome Aggregation Database	African	Sub	8720	T=0.900	C=0.100
The Genome Aggregation Database	American	Sub	836	T=0.940	C=0.060
The Genome Aggregation Database	East Asian	Sub	1616	T=0.955	C=0.045
The Genome Aggregation Database	Europe	Sub	18488	T=0.914	C=0.085
The Genome Aggregation Database	Global	Study-wide	29962	T=0.912	C=0.087
The Genome Aggregation Database	Other	Sub	302	T=0.850	C=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.903	C=0.097
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.897	C=0.103

rs9524349