rs9524405

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0161 (4823/29948,GnomAD)
C=0206 (6023/29118,TOPMED)
C=0158 (789/5008,1000G)
C=0106 (410/3854,ALSPAC)
C=0103 (383/3708,TWINSUK)
chr13:87061179 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87061179T>C
GRCh37.p13 chr 13NC_000013.10:g.87713434T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.626C=0.374
1000GenomesAmericanSub694T=0.900C=0.100
1000GenomesEast AsianSub1008T=0.970C=0.030
1000GenomesEuropeSub1006T=0.906C=0.094
1000GenomesGlobalStudy-wide5008T=0.842C=0.158
1000GenomesSouth AsianSub978T=0.900C=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.894C=0.106
The Genome Aggregation DatabaseAfricanSub8718T=0.651C=0.349
The Genome Aggregation DatabaseAmericanSub834T=0.930C=0.070
The Genome Aggregation DatabaseEast AsianSub1622T=0.955C=0.045
The Genome Aggregation DatabaseEuropeSub18472T=0.913C=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29948T=0.839C=0.161
The Genome Aggregation DatabaseOtherSub302T=0.840C=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.793C=0.206
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.897C=0.103
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95244050.000119alcohol consumption23743675

eQTL of rs9524405 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr13:87713434SLITRK5ENSG00000165300.6T>C7.2166e-3-611436Cerebellar_Hemisphere

meQTL of rs9524405 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.