SNP Detail Info-rs9524428

Organism: Homo sapiens

Alleles: T>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0158 (4758/29952,GnomAD)
A=0204 (5960/29118,TOPMED)
A=0157 (785/5008,1000G)
A=0106 (410/3854,ALSPAC)
A=0103 (383/3708,TWINSUK)

Position: chr13:87062874 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87062874T>A
GRCh37.p13 chr 13	NC_000013.10:g.87715129T>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.628	A=0.372
1000Genomes	American	Sub	694	T=0.900	A=0.100
1000Genomes	East Asian	Sub	1008	T=0.970	A=0.030
1000Genomes	Europe	Sub	1006	T=0.906	A=0.094
1000Genomes	Global	Study-wide	5008	T=0.843	A=0.157
1000Genomes	South Asian	Sub	978	T=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.894	A=0.106
The Genome Aggregation Database	African	Sub	8706	T=0.657	A=0.343
The Genome Aggregation Database	American	Sub	838	T=0.930	A=0.070
The Genome Aggregation Database	East Asian	Sub	1618	T=0.955	A=0.045
The Genome Aggregation Database	Europe	Sub	18490	T=0.913	A=0.086
The Genome Aggregation Database	Global	Study-wide	29952	T=0.841	A=0.158
The Genome Aggregation Database	Other	Sub	300	T=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.795	A=0.204
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.897	A=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9524428	0.000125	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87715129	SLITRK5	ENSG00000165300.6	T>A	7.2166e-3	-609741	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9524428