rs9524429

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0159 (4770/29908,GnomAD)
T=0204 (5961/29118,TOPMED)
T=0157 (785/5008,1000G)
T=0106 (409/3854,ALSPAC)
T=0103 (383/3708,TWINSUK)
chr13:87062938 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87062938C>T
GRCh37.p13 chr 13NC_000013.10:g.87715193C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.628T=0.372
1000GenomesAmericanSub694C=0.900T=0.100
1000GenomesEast AsianSub1008C=0.970T=0.030
1000GenomesEuropeSub1006C=0.906T=0.094
1000GenomesGlobalStudy-wide5008C=0.843T=0.157
1000GenomesSouth AsianSub978C=0.900T=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.894T=0.106
The Genome Aggregation DatabaseAfricanSub8690C=0.656T=0.344
The Genome Aggregation DatabaseAmericanSub838C=0.930T=0.070
The Genome Aggregation DatabaseEast AsianSub1618C=0.955T=0.045
The Genome Aggregation DatabaseEuropeSub18460C=0.913T=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29908C=0.840T=0.159
The Genome Aggregation DatabaseOtherSub302C=0.840T=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.795T=0.204
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.897T=0.103
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95244290.000122alcohol consumption23743675

eQTL of rs9524429 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr13:87715193SLITRK5ENSG00000165300.6C>T7.2166e-3-609677Cerebellar_Hemisphere

meQTL of rs9524429 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.