rs9524539

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0099 (2971/29964,GnomAD)
C=0117 (3417/29118,TOPMED)
C=0095 (478/5008,1000G)
C=0103 (396/3854,ALSPAC)
C=0103 (383/3708,TWINSUK)
chr13:87088873 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87088873T>C
GRCh37.p13 chr 13NC_000013.10:g.87741128T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.862C=0.138
1000GenomesAmericanSub694T=0.920C=0.080
1000GenomesEast AsianSub1008T=0.968C=0.032
1000GenomesEuropeSub1006T=0.907C=0.093
1000GenomesGlobalStudy-wide5008T=0.905C=0.095
1000GenomesSouth AsianSub978T=0.880C=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.897C=0.103
The Genome Aggregation DatabaseAfricanSub8710T=0.862C=0.138
The Genome Aggregation DatabaseAmericanSub838T=0.930C=0.070
The Genome Aggregation DatabaseEast AsianSub1618T=0.954C=0.046
The Genome Aggregation DatabaseEuropeSub18496T=0.914C=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29964T=0.900C=0.099
The Genome Aggregation DatabaseOtherSub302T=0.850C=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.882C=0.117
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.897C=0.103
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95245390.000135alcohol consumption23743675

eQTL of rs9524539 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr13:87741128SLITRK5ENSG00000165300.6T>C7.2166e-3-583742Cerebellar_Hemisphere

meQTL of rs9524539 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07039623
chr138778099087781070E07039862
chr138778113987781194E07040011
chr138778136187781523E07040233
chr138778160987781698E07040481
chr138778189787782225E07040769
chr138778224887782420E07041120
chr138778273087782844E07041602
chr138778399687784117E07042868