rs9524579

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0170 (4950/29118,TOPMED)
G=0128 (641/5008,1000G)
G=0104 (401/3854,ALSPAC)
G=0105 (389/3708,TWINSUK)
chr13:87096432 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87096432C>G
GRCh37.p13 chr 13NC_000013.10:g.87748687C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.746G=0.254
1000GenomesAmericanSub694C=0.910G=0.090
1000GenomesEast AsianSub1008C=0.968G=0.032
1000GenomesEuropeSub1006C=0.906G=0.094
1000GenomesGlobalStudy-wide5008C=0.872G=0.128
1000GenomesSouth AsianSub978C=0.880G=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.896G=0.104
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.830G=0.170
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.895G=0.105
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95245790.000109alcohol consumption23743675

eQTL of rs9524579 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9524579 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07032064
chr138778099087781070E07032303
chr138778113987781194E07032452
chr138778136187781523E07032674
chr138778160987781698E07032922
chr138778189787782225E07033210
chr138778224887782420E07033561
chr138778273087782844E07034043
chr138778399687784117E07035309