| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 13 | NC_000013.11:g.87102225A>G |
| GRCh37.p13 chr 13 | NC_000013.10:g.87754480A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.982 | G=0.018 |
| 1000Genomes | American | Sub | 694 | A=0.940 | G=0.060 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.968 | G=0.032 |
| 1000Genomes | Europe | Sub | 1006 | A=0.908 | G=0.092 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.939 | G=0.061 |
| 1000Genomes | South Asian | Sub | 978 | A=0.890 | G=0.110 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.895 | G=0.105 |
| The Genome Aggregation Database | African | Sub | 8726 | A=0.972 | G=0.028 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.940 | G=0.060 |
| The Genome Aggregation Database | East Asian | Sub | 1618 | A=0.954 | G=0.046 |
| The Genome Aggregation Database | Europe | Sub | 18484 | A=0.914 | G=0.085 |
| The Genome Aggregation Database | Global | Study-wide | 29968 | A=0.933 | G=0.066 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.840 | G=0.160 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.932 | G=0.067 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.896 | G=0.104 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23743675 | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. | Kapoor M | Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs9524592 | 0.00013 | alcohol consumption | 23743675 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
|---|---|---|---|---|---|---|
| Chr13:87754480 | SLITRK5 | ENSG00000165300.6 | A>G | 7.2166e-3 | -570390 | Cerebellar_Hemisphere |
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr13 | 87780751 | 87780970 | E070 | 26271 |
| chr13 | 87780990 | 87781070 | E070 | 26510 |
| chr13 | 87781139 | 87781194 | E070 | 26659 |
| chr13 | 87781361 | 87781523 | E070 | 26881 |
| chr13 | 87781609 | 87781698 | E070 | 27129 |
| chr13 | 87781897 | 87782225 | E070 | 27417 |
| chr13 | 87782248 | 87782420 | E070 | 27768 |
| chr13 | 87782730 | 87782844 | E070 | 28250 |
| chr13 | 87783996 | 87784117 | E070 | 29516 |