rs952766

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0482 (14434/29932,GnomAD)
A=0432 (12594/29116,TOPMED)
A=0424 (2123/5008,1000G)
G==0391 (1505/3854,ALSPAC)
G==0392 (1454/3708,TWINSUK)
chr13:54341371 (GRCh38.p7) (13q14.3)
AD
GWASdb2
1   publication(s)
See rs on genome
19 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.54341371G>A
GRCh37.p13 chr 13NC_000013.10:g.54915506G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.840A=0.160
1000GenomesAmericanSub694G=0.620A=0.380
1000GenomesEast AsianSub1008G=0.558A=0.442
1000GenomesEuropeSub1006G=0.399A=0.601
1000GenomesGlobalStudy-wide5008G=0.576A=0.424
1000GenomesSouth AsianSub978G=0.390A=0.610
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.391A=0.609
The Genome Aggregation DatabaseAfricanSub8714G=0.767A=0.233
The Genome Aggregation DatabaseAmericanSub838G=0.620A=0.380
The Genome Aggregation DatabaseEast AsianSub1614G=0.547A=0.453
The Genome Aggregation DatabaseEuropeSub18464G=0.394A=0.605
The Genome Aggregation DatabaseGlobalStudy-wide29932G=0.517A=0.482
The Genome Aggregation DatabaseOtherSub302G=0.400A=0.600
Trans-Omics for Precision MedicineGlobalStudy-wide29116G=0.567A=0.432
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.392A=0.608
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs9527660.000575alcohol dependence20201924

eQTL of rs952766 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs952766 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr135493032054930946E07014814
chr135493109954931267E07015593
chr135494729554947396E07031789
chr135494743754948258E07031931
chr135494836254948416E07032856
chr135494848054948592E07032974
chr135494864754948925E07033141
chr135494896954949085E07033463
chr135494729554947396E08131789
chr135494743754948258E08131931
chr135494836254948416E08132856
chr135494848054948592E08132974
chr135494864754948925E08133141
chr135494896954949085E08133463
chr135494743754948258E08231931
chr135494836254948416E08232856
chr135494848054948592E08232974
chr135494864754948925E08233141
chr135494896954949085E08233463