rs9536287

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0446 (13325/29826,GnomAD)
A=0394 (11483/29114,TOPMED)
A=0386 (1932/5008,1000G)
G==0437 (1683/3854,ALSPAC)
G==0434 (1608/3708,TWINSUK)
chr13:52785277 (GRCh38.p7) (13q14.3)
AD
GWASdb2
1   publication(s)
See rs on genome
147 Enhancers around
7 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.52785277G>A
GRCh37.p13 chr 13NC_000013.10:g.53359412G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.765A=0.235
1000GenomesAmericanSub694G=0.540A=0.460
1000GenomesEast AsianSub1008G=0.794A=0.206
1000GenomesEuropeSub1006G=0.464A=0.536
1000GenomesGlobalStudy-wide5008G=0.614A=0.386
1000GenomesSouth AsianSub978G=0.430A=0.570
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.437A=0.563
The Genome Aggregation DatabaseAfricanSub8670G=0.728A=0.272
The Genome Aggregation DatabaseAmericanSub834G=0.540A=0.460
The Genome Aggregation DatabaseEast AsianSub1618G=0.787A=0.213
The Genome Aggregation DatabaseEuropeSub18408G=0.450A=0.549
The Genome Aggregation DatabaseGlobalStudy-wide29826G=0.553A=0.446
The Genome Aggregation DatabaseOtherSub296G=0.550A=0.450
Trans-Omics for Precision MedicineGlobalStudy-wide29114G=0.605A=0.394
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.434A=0.566
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs95362870.00029alcohol dependence(early age of onset)20201924
rs95362870.00078alcohol dependence20201924

eQTL of rs9536287 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9536287 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr135335669953357069E067-2343
chr135335710053357154E067-2258
chr135336140353361466E0671991
chr135336154353361679E0672131
chr135331156253311680E068-47732
chr135331172953311779E068-47633
chr135334035853340446E068-18966
chr135335307353353386E068-6026
chr135335338953353775E068-5637
chr135335383853353909E068-5503
chr135335398653354083E068-5329
chr135335647653356558E068-2854
chr135335952153359571E068109
chr135335997253360161E068560
chr135336096853361249E0681556
chr135336140353361466E0681991
chr135336154353361679E0682131
chr135336181853361948E0682406
chr135340720053407264E06847788
chr135340750553407684E06848093
chr135340771053407945E06848298
chr135335307353353386E069-6026
chr135335338953353775E069-5637
chr135335383853353909E069-5503
chr135335398653354083E069-5329
chr135335647653356558E069-2854
chr135335669953357069E069-2343
chr135335710053357154E069-2258
chr135335716953357459E069-1953
chr135335870453359479E0690
chr135335952153359571E069109
chr135335997253360161E069560
chr135336096853361249E0691556
chr135336140353361466E0691991
chr135336154353361679E0692131
chr135336181853361948E0692406
chr135340750553407684E06948093
chr135340771053407945E06948298
chr135331182753311905E070-47507
chr135336947053369550E07010058
chr135336969053369787E07010278
chr135336987853370402E07010466
chr135337126753371665E07011855
chr135337170853371812E07012296
chr135337181853371868E07012406
chr135337195353372025E07012541
chr135337212653372206E07012714
chr135337282353372956E07013411
chr135335307353353386E071-6026
chr135335338953353775E071-5637
chr135335383853353909E071-5503
chr135335398653354083E071-5329
chr135335647653356558E071-2854
chr135335669953357069E071-2343
chr135335710053357154E071-2258
chr135335716953357459E071-1953
chr135335952153359571E071109
chr135335997253360161E071560
chr135336096853361249E0711556
chr135336140353361466E0711991
chr135336154353361679E0712131
chr135336181853361948E0712406
chr135336214953362472E0712737
chr135338314053383972E07123728
chr135335307353353386E072-6026
chr135335338953353775E072-5637
chr135335383853353909E072-5503
chr135335398653354083E072-5329
chr135335647653356558E072-2854
chr135335669953357069E072-2343
chr135335710053357154E072-2258
chr135335716953357459E072-1953
chr135335997253360161E072560
chr135336096853361249E0721556
chr135336140353361466E0721991
chr135336154353361679E0722131
chr135338037753380431E07220965
chr135338062853380678E07221216
chr135340720053407264E07247788
chr135340750553407684E07248093
chr135340771053407945E07248298
chr135335307353353386E074-6026
chr135335338953353775E074-5637
chr135335383853353909E074-5503
chr135335398653354083E074-5329
chr135335647653356558E074-2854
chr135335669953357069E074-2343
chr135335710053357154E074-2258
chr135335716953357459E074-1953
chr135335952153359571E074109
chr135335997253360161E074560
chr135336096853361249E0741556
chr135336140353361466E0741991
chr135336154353361679E0742131
chr135336181853361948E0742406
chr135336214953362472E0742737
chr135337990353379953E07420491
chr135338026553380373E07420853
chr135338037753380431E07420965
chr135338314053383972E07423728
chr135331063453310684E081-48728
chr135331102053311167E081-48245
chr135331123153311322E081-48090
chr135331475353314919E081-44493
chr135333229153332731E081-26681
chr135333274553332848E081-26564
chr135333972553339775E081-19637
chr135333983053340266E081-19146
chr135334035853340446E081-18966
chr135335307353353386E081-6026
chr135335338953353775E081-5637
chr135336947053369550E08110058
chr135336969053369787E08110278
chr135336987853370402E08110466
chr135337103853371128E08111626
chr135337126753371665E08111855
chr135337170853371812E08112296
chr135337181853371868E08112406
chr135337195353372025E08112541
chr135337212653372206E08112714
chr135337382653373886E08114414
chr135337388853373971E08114476
chr135337402753374375E08114615
chr135337438753374469E08114975
chr135337454453374761E08115132
chr135340771053407945E08148298
chr135331156253311680E082-47732
chr135331172953311779E082-47633
chr135331182753311905E082-47507
chr135332800653328448E082-30964
chr135333972553339775E082-19637
chr135333983053340266E082-19146
chr135334035853340446E082-18966
chr135336947053369550E08210058
chr135336969053369787E08210278
chr135336987853370402E08210466
chr135337103853371128E08211626
chr135337126753371665E08211855
chr135337170853371812E08212296
chr135337181853371868E08212406
chr135337195353372025E08212541
chr135337212653372206E08212714
chr135337372053373770E08214308
chr135340663753406733E08247225
chr135340720053407264E08247788
chr135340750553407684E08248093
chr135340771053407945E08248298









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr135331266053314519E067-44893
chr135331266053314519E068-44893
chr135331266053314519E069-44893
chr135331266053314519E072-44893
chr135331266053314519E073-44893
chr135331266053314519E074-44893
chr135331266053314519E082-44893