SNP Detail Info-rs9542387

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0335 (10012/29840,GnomAD)
A=0310 (9041/29116,TOPMED)
A=0318 (1595/5008,1000G)
A=0402 (1551/3854,ALSPAC)
A=0390 (1446/3708,TWINSUK)

Position: chr13:70562011 (GRCh38.p7) (13q21.33)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.70562011G>A
GRCh37.p13 chr 13	NC_000013.10:g.71136143G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.795	A=0.205
1000Genomes	American	Sub	694	G=0.720	A=0.280
1000Genomes	East Asian	Sub	1008	G=0.620	A=0.380
1000Genomes	Europe	Sub	1006	G=0.601	A=0.399
1000Genomes	Global	Study-wide	5008	G=0.682	A=0.318
1000Genomes	South Asian	Sub	978	G=0.650	A=0.350
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.598	A=0.402
The Genome Aggregation Database	African	Sub	8700	G=0.786	A=0.214
The Genome Aggregation Database	American	Sub	834	G=0.690	A=0.310
The Genome Aggregation Database	East Asian	Sub	1594	G=0.625	A=0.375
The Genome Aggregation Database	Europe	Sub	18410	G=0.611	A=0.389
The Genome Aggregation Database	Global	Study-wide	29840	G=0.664	A=0.335
The Genome Aggregation Database	Other	Sub	302	G=0.570	A=0.430
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.689	A=0.310
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.610	A=0.390

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9542387	0.000404	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9542387