rs9546562

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
C==0074 (2242/29932,GnomAD)
C==0063 (1856/29118,TOPMED)
C==0060 (299/5008,1000G)
C==0066 (255/3854,ALSPAC)
C==0059 (220/3708,TWINSUK)
chr13:84001894 (GRCh38.p7) (13q31.1)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.84001894C>A
GRCh37.p13 chr 13NC_000013.10:g.84576029C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.053A=0.947
1000GenomesAmericanSub694C=0.180A=0.820
1000GenomesEast AsianSub1008C=0.004A=0.996
1000GenomesEuropeSub1006C=0.075A=0.925
1000GenomesGlobalStudy-wide5008C=0.060A=0.940
1000GenomesSouth AsianSub978C=0.020A=0.980
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.066A=0.934
The Genome Aggregation DatabaseAfricanSub8712C=0.063A=0.937
The Genome Aggregation DatabaseAmericanSub834C=0.210A=0.790
The Genome Aggregation DatabaseEast AsianSub1620C=0.002A=0.998
The Genome Aggregation DatabaseEuropeSub18464C=0.081A=0.918
The Genome Aggregation DatabaseGlobalStudy-wide29932C=0.074A=0.925
The Genome Aggregation DatabaseOtherSub302C=0.050A=0.950
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.063A=0.936
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.059A=0.941
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs95465626.83E-06alcohol and nictotine co-dependence20158304

eQTL of rs9546562 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9546562 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.