SNP Detail Info-rs9546566

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0084 (2462/29118,TOPMED)
G=0092 (2612/28382,GnomAD)
G=0075 (378/5008,1000G)
G=0066 (254/3854,ALSPAC)
G=0059 (220/3708,TWINSUK)

Position: chr13:84017727 (GRCh38.p7) (13q31.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.84017727A>G
GRCh37.p13 chr 13	NC_000013.10:g.84591862A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.892	G=0.108
1000Genomes	American	Sub	694	A=0.810	G=0.190
1000Genomes	East Asian	Sub	1008	A=0.995	G=0.005
1000Genomes	Europe	Sub	1006	A=0.925	G=0.075
1000Genomes	Global	Study-wide	5008	A=0.925	G=0.075
1000Genomes	South Asian	Sub	978	A=0.980	G=0.020
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.934	G=0.066
The Genome Aggregation Database	African	Sub	8444	A=0.884	G=0.116
The Genome Aggregation Database	American	Sub	716	A=0.780	G=0.220
The Genome Aggregation Database	East Asian	Sub	1598	A=0.997	G=0.003
The Genome Aggregation Database	Europe	Sub	17326	A=0.915	G=0.084
The Genome Aggregation Database	Global	Study-wide	28382	A=0.908	G=0.092
The Genome Aggregation Database	Other	Sub	298	A=0.960	G=0.040
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.915	G=0.084
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.941	G=0.059

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs9546566	1.02E-05	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9546566