rs9546566

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0084 (2462/29118,TOPMED)
G=0092 (2612/28382,GnomAD)
G=0075 (378/5008,1000G)
G=0066 (254/3854,ALSPAC)
G=0059 (220/3708,TWINSUK)
chr13:84017727 (GRCh38.p7) (13q31.1)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.84017727A>G
GRCh37.p13 chr 13NC_000013.10:g.84591862A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.892G=0.108
1000GenomesAmericanSub694A=0.810G=0.190
1000GenomesEast AsianSub1008A=0.995G=0.005
1000GenomesEuropeSub1006A=0.925G=0.075
1000GenomesGlobalStudy-wide5008A=0.925G=0.075
1000GenomesSouth AsianSub978A=0.980G=0.020
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.934G=0.066
The Genome Aggregation DatabaseAfricanSub8444A=0.884G=0.116
The Genome Aggregation DatabaseAmericanSub716A=0.780G=0.220
The Genome Aggregation DatabaseEast AsianSub1598A=0.997G=0.003
The Genome Aggregation DatabaseEuropeSub17326A=0.915G=0.084
The Genome Aggregation DatabaseGlobalStudy-wide28382A=0.908G=0.092
The Genome Aggregation DatabaseOtherSub298A=0.960G=0.040
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.915G=0.084
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.941G=0.059
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs95465661.02E-05alcohol and nictotine co-dependence20158304

eQTL of rs9546566 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9546566 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.