rs9547256

Homo sapiens
T>A / T>G
LINC00351 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0471 (14081/29862,GnomAD)
G=0452 (13179/29118,TOPMED)
T==0432 (2161/5008,1000G)
T==0412 (1589/3854,ALSPAC)
T==0407 (1511/3708,TWINSUK)
chr13:85540315 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.85540315T>A
GRCh38.p7 chr 13NC_000013.11:g.85540315T>G
GRCh37.p13 chr 13NC_000013.10:g.86114450T>A
GRCh37.p13 chr 13NC_000013.10:g.86114450T>G

Gene: LINC00351, long intergenic non-protein coding RNA 351(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC00351 transcriptNR_046989.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.815G=0.185
1000GenomesAmericanSub694T=0.460G=0.540
1000GenomesEast AsianSub1008T=0.096G=0.904
1000GenomesEuropeSub1006T=0.378G=0.622
1000GenomesGlobalStudy-wide5008T=0.432G=0.568
1000GenomesSouth AsianSub978T=0.300G=0.700
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.412G=0.588
The Genome Aggregation DatabaseAfricanSub8714T=0.751A=0.000
The Genome Aggregation DatabaseAmericanSub830T=0.370A=0.00,
The Genome Aggregation DatabaseEast AsianSub1600T=0.089A=0.000
The Genome Aggregation DatabaseEuropeSub18416T=0.379A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29862T=0.471A=0.000
The Genome Aggregation DatabaseOtherSub302T=0.310A=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.547G=0.452
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.407G=0.593
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs95472560.000228alcohol dependence20201924

eQTL of rs9547256 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9547256 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.