SNP Detail Info-rs9549880

Organism: Homo sapiens

Alleles: G>A / G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0236 (7060/29906,GnomAD)
A=0230 (6709/29118,TOPMED)
A=0261 (1306/5008,1000G)
A=0279 (1076/3854,ALSPAC)
A=0272 (1010/3708,TWINSUK)

Position: chr13:112207874 (GRCh38.p7) (13q34)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.840	A=0.160
1000Genomes	American	Sub	694	G=0.850	A=0.150
1000Genomes	East Asian	Sub	1008	G=0.700	A=0.300
1000Genomes	Europe	Sub	1006	G=0.713	A=0.287
1000Genomes	Global	Study-wide	5008	G=0.739	A=0.261
1000Genomes	South Asian	Sub	978	G=0.590	A=0.410
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.721	A=0.279
The Genome Aggregation Database	African	Sub	8710	G=0.833	T=0.000
The Genome Aggregation Database	American	Sub	838	G=0.880	T=0.00,
The Genome Aggregation Database	East Asian	Sub	1606	G=0.711	T=0.000
The Genome Aggregation Database	Europe	Sub	18452	G=0.730	T=0.000
The Genome Aggregation Database	Global	Study-wide	29906	G=0.763	T=0.000
The Genome Aggregation Database	Other	Sub	300	G=0.770	T=0.00,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.769	A=0.230
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.728	A=0.272

PMID	Title	Author	Journal
24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Quillen EE	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs9549880	0.000593	alcohol consumption (maxi-drinks)	24277619

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9549880